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Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling

Chen R, Fan R, Chen F, Govindasamy N, Brinkmann H, Stehling M, Adams RH, Jeong HW, Bedzhov I., 05.09.2024

Abstract

Embryonic diapause is a reproductive adaptation that enables some mammalian species to halt the otherwise continuous pace of embryonic development. In this dormant state, the embryo exploits poorly understood regulatory mechanisms to preserve its developmental potential for prolonged periods of time. Here, using mouse embryos and single-cell RNA sequencing, we molecularly defined embryonic diapause at single-cell resolution, revealing transcriptional dynamics while the embryo seemingly resides in a state of suspended animation. Additionally, we found that the dormant pluripotent cells rely on integrin receptors to sense their microenvironment and preserve their viability via Yap/Taz-mediated prosurvival signaling.

Chen R, Fan R, Chen F, Govindasamy N, Brinkmann H, Stehling M, Adams RH, Jeong HW, Bedzhov I. Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling. Cell Stem Cell. 2024 Sep 5;31(9):1262-1279.e8. doi: 10.1016/j.stem.2024.06.015.

Publication: https://doi.org/10.1016/j.stem.2024.06.015
Repository: Dataset 1: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241462 and https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE159883; Dataset 2: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE241461

Disclaimer

The publication Analyzing embryo dormancy at single-cell resolution reveals dynamic transcriptional responses and activation of integrin-Yap/Taz prosurvival signaling by Chen R, Fan R, Chen F, Govindasamy N, Brinkmann H, Stehling M, Adams RH, Jeong HW, Bedzhov I. is published under an open access license: https://creativecommons.org/licenses/by/4.0/. Permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited.

Curation by the MFGA team
Relevant data sets presented in the publication have been identified. If possible, annotations (title, general information, conditions, processed tissue types and processed cell types) have been added based on information from the publication. Data tables and images that provide a good overview on the publication's findings on the data set have been extracted from the publication and/or supplement. If not stated otherwise, images are depicted with title and description exactly as in the publication. Tables have been adjusted to the MFGA table format. Conducted adjustments are explained in the detailed view of the tables. However, titles and descriptions have been adopted from the publication.

Data set 1: scRNA-seq of EDG7.5, EDG9.5, Reactivated, E4.5 and E5.5 embryos Illumina

Transcriptome: Single-cell RNA-Sequencing

Species

Species
Mouse

Data set 2: RNA-seq analysis of wildtype, Taz knockout, and Yap/Taz double knockout ESCs

Transcriptome: RNA-Sequencing

Species

Species
Mouse