Table 2: Variants identified by WES and confirmed by Sanger sequencing.
ARAUJO, T. Fenz, et al. Sequence analysis of 37 candidate genes for male infertility: challenges in variant assessment and validating genes. Andrology, 2020, 8. Jg., Nr. 2, S. 434-441.
Publication: https://doi.org/10.1111/andr.12704
Description
ID: Patient Identity, Inh: inheritance pattern, SCOS: Sertoli cell-only syndrome, Mat.A: germ cell maturation arrest, AD: autosomal dominant inheritance, AR: autosomal recessive inheritance, 1/0: variant found in heterozygous status, 1/1: variant found in homozygous status, B: benign prediction, P: possibly or probably pathogenic, T: tolerated, D: deleterious or damaging, N: neutral. 1ESP, 1000 Genomes, gnomAD. 2gnomAD *Dominant variants with frequency > 0.01 (see text for reasons why they were included).
Disclaimer
The publication Sequence analysis of 37 candidate genes for male infertility: Challenges in variant assessment and validating genes by Thais Fenz Araujo, Corinna Friedrich, Carlos Henrique Paiva Grangeiro, Lucia Regina Martelli, J D Grzesiuk, Jana Emich, Margot Julia Wyrwoll, Sabine Kliesch, Aguinaldo Luíz Simões, Frank Tüttelmann is published under an open access license: https://creativecommons.org/licenses/by-nc/4.0/. Share — copy and redistribute the material in any medium or format Adapt — remix, transform, and build upon the material
Curation by the MFGA team
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Table
ARTIFACTID | GENE | protein | Id | Phenotype | Transcript | Inh. | Cdna | Genotype | Polyphen/sift/mutationTaster | Cadd>10Damage | MaximumAlleleFrequencyInAnySub-population | AlleleFrequencyInLatinoPopulation |
---|---|---|---|---|---|---|---|---|---|---|---|---|
NM_031271.3 | TEX15 | p.(Gly2692Arg) | M1804 | SCOS | NM_031271.3 | AR | c.8074G>A | 1/0 | P/-/N | 24.9 | 0.005 | 0.0035 |
NM_031271.3 | TEX15 | p.(Ser1990Asn) | M1804 | SCOS | NM_031271.3 | AR | c.5969G>A | 1/0 | B/-/N | 9.1 | 0.0257 | 0.0111 |
NM_01048205.1 | REC8 | p.(Arg31Cys) | M1809 | NOA | NM_01048205.1 | AD | c.91C>T | 1/0 | P/-/D | 35 | 0.0052 | 0.001 |
NM_01129979.1 | SYCE1L | p.(Leu8Val) | M1809 | NOA | NM_01129979.1 | AR | c.22C>G | 1/0 | P/-/- | 6.4 | 0.0386 | 0.0016 |
NM_01201457.1 | TEX14 | p.(Glu1433Lys) | M1810 | Mat.A | NM_01201457.1 | AR | c.4297G>A | 1/0 | B/D/D | 26.9 | 0.0039 | 0 |
NM_01201457.1 | TEX14 | p.(Gln243Glu) | M1810 | Mat.A | NM_01201457.1 | AR | c.727C>G | 1/0 | P/D/D | 25.9 | 0.012 | 0.0005 |
NM_01329595.1 | KLHL10 | p.(Asn81Ile) | M1811 | NOA | NM_01329595.1 | AD | c.242A>T | 1/0 | B/T/D | 19.2 | 0.002 | 0.0013 |
NM_006892.3 | DNMT3B | p.(Val818Met) | M1814 | NOA | NM_006892.3 | AD | c.2452G>A | 1/0 | P/D/- | 34 | 0.0001 | 0 |
NM_01329595.1 | KLHL10 | p.(Ile396Thr) | M1816 | SCOS | NM_01329595.1 | AD | c.887T>C | 1/0 | B/T/D | 23 | 0.0102* | - |
NM_021951.2 | DMRT1 | p.(Asn224Ser) | M1816 | SCOS | NM_021951.2 | AD | c.671A>G | 1/0 | P/T/D | 25.4 | 0.0124* | 0.0012 |