Table S1: List of Gene Markers Used to Identify Somatic and Germ Cell Clusters
SOHNI, Abhishek, et al. The Neonatal and Adult Human Testis Defined at the Single-Cell Level. Cell reports, 2019, 26. Jg., Nr. 6, S. 1501-1517. e4.
Publication: https://doi.org/10.1016/j.celrep.2019.01.045
Description
Related to Figures 1, 5, S1, and S5.*NANOS3, PGC expression and turned off in SSC, but on again in Progenitors and diff SPG.*MAGEA4 - PreSG specific marker. Off or low at PGC but on at ProSG. But lower again in SSC. Increased in Progenitors and diff SPG.*DDX4 - General germ cell marker, expressed broad range of germ cells from PreSG to St. But low in PGCs.*KIT - expressed in PGC but low until Diff SPG. #UTF1 - expressed in PGC as well.Changes in the table conducted for representation in the MFGA:Table format has been adjusted.Marker Genes were separated into single rows according to cell type.
Disclaimer
The publication The Neonatal and Adult Human Testis Defined at the Single-Cell Level by Abhishek Sohni, Kun Tan, Hye-Won Song, Dana Burow, Dirk G.de Rooij, Louise Laurent, Tung-Chin Hsieh, Raja Rabah, Saher Sue Hammoud, Elena Vicini, Miles F. Wilkinson is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.
Curation by the MFGA team
Pie chart of selected column
Table
GENE | CellType | Cell |
---|---|---|
GATA1 | SomaticCells | Sertoli(adult) |
WT1 | SomaticCells | Sertoli(adult) |
GATA4 | SomaticCells | Sertoli(adult) |
INHA | SomaticCells | Sertoli(prepubertal) |
SOX9 | SomaticCells | Sertoli(prepubertal) |
SOX4 | SomaticCells | Sertoli(prepubertal) |
INHBB | SomaticCells | Sertoli(prepubertal) |
MYH11 | SomaticCells | PTM(Adult) |
CNN1 | SomaticCells | PTM(Adult) |
SMA | SomaticCells | PTM(Adult) |
ACTA2 | SomaticCells | PTM(Adult) |
TPM1 | SomaticCells | PTM (Adult) |
TAGLN | Somatic Cells | PTM(Fetal) |
HSD3B2 | SomaticCells | LC(Adult) |
IGF1 | SomaticCells | LC(Adult) |
INSL3 | SomaticCells | LC(Adult) |
STAR | SomaticCells | LC(Adult) |
SF1 | SomaticCells | LC(Adult) |
CYP1B1 | SomaticCells | LC(Adult) |
HSD3B1 | SomaticCells | LC(Adult) |
INHBA | SomaticCells | LC(prepubertal) |
VCAM1 | SomaticCells | LC(fetal) |
TSP2 | SomaticCells | LC(fetal) |
CD34 | SomaticCells | Endothelial |
CD74 | SomaticCells | Blood |
HLA-DRB1 | SomaticCells | Blood |
HBA2 | SomaticCells | Blood |
HBG2 | SomaticCells | Blood |
HBG1 | SomaticCells | Blood |
AIF1 | SomaticCells | Macrophage |
CD68 | SomaticCells | Macrophage |
MGP | SomaticCells | Stroma |
GNG11 | SomaticCells | Stroma |
SPARCL1 | SomaticCells | Stroma |
SLC9A3R2 | SomaticCells | Stroma |
HLA-B | SomaticCells | Stroma |
KLF2 | SomaticCells | Stroma |
FSP1 | SomaticCells | Fibroblasts |
POU5F1 | GermCells | PGC |
NANOG | GermCells | PGC |
SOX17 | GermCells | PGC |
TFAPC2 | GermCells | PGC |
NANOS3 | GermCells | PGC |
PDPN | GermCells | PGC |
KIT | GermCells | PGC |
TCL1A | GermCells | PGC |
ZFP42 | GermCells | PGC |
SOX15 | GermCells | PGC |
DPPA3 | GermCells | PGC |
TET1 | GermCells | PGC |
T | GermCells | PGC |
CD38 | GermCells | PGC |
PRDM1 | GermCells | PGC |
PIWIL1 | GermCells | PGC |
DND1 | GermCells | PGC |
PIWIL4 | GermCells | PreSG |
DDX4 | GermCells | PreSG |
MAGEA4 | GermCells | PreSG |
PIWIL2 | GermCells | PreSG |
UTF1 | GermCells | PreSG |
TEX14 | GermCells | PreSG |
TEX15 | GermCells | PreSG |
TDRD6 | GermCells | PreSG |
KLF5 | GermCells | PreSG |
TFCP2L | GermCells | PreSG |
CPEB1 | GermCells | PreSG |
LIN7B | GermCells | SSC |
C19orf84 | GermCells | SSC |
PIWIL4 | GermCells | SSC |
UTF1 | GermCells | SSC |
MAGEB2 | GermCells | SSC |
PODXL2 | GermCells | SSC |
EGR4 | GermCells | SSC |
FSD1 | GermCells | SSC |
RAC3 | GermCells | SSC |
TCF3 | GermCells | SSC |
MSL3 | GermCells | SSC |
MORC1 | GermCells | SSC |
STK31 | GermCells | SSC |
NOC4L | GermCells | SSC |
LPPR5 | Germ Cells | SSC |
SURF2 | GermCells | SSC |
RGS14 | GermCells | SSC |
PTRHD1 | GermCells | SSC |
ENHO | GermCells | SSC |
SH2B2 | GermCells | SSC |
CPEB1 | GermCells | SSC |
NGN3 | GermCells | Progenitors |
NANOS3 | GermCells | Progenitors |
MAGEA4 | GermCells | Progenitors |
ID4 | GermCells | UndiffSPG |
ZBTB16 | GermCells | UndiffSPG |
BCL6B | GermCells | UndiffSPG |
LIN28 | GermCells | UndiffSPG |
UTF1 | GermCells | UndiffSPG |
SALL4 | GermCells | UndiffSPG |
FGFR3 | GermCells | UndiffSPG |
KIT | GermCells | DiffSPG |
SOHLH1 | GermCells | DiffSPG |
SOHLH2 | GermCells | DiffSPG |
STRA8 | GermCells | DiffSPG |
DMRT1 | GermCells | DiffSPG |
REC8 | GermCells | SPC |
SPO11 | GermCells | SPC |
RAD51 | GermCells | SPC |
ACRROSIN | GermCells | SPC |
SYCP1 | GermCells | SPC |
SYCP3 | GermCells | SPC |
STRA8 | GermCells | SPC |
TNP1 | GermCells | St |
TNP2 | GermCells | St |
PRM1 | GermCells | St |
PRM2 | GermCells | St |