Supplementary table S2
LUKASSEN, Soeren, et al. Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing. Scientific reports, 2018, 8. Jg., Nr. 1, S. 6521-6521.
Publication: https://doi.org/10.1038/s41598-018-24725-0
Description
Through thorough literature review, a list of stage markers of spermatogenesis was compiled, containing 233 published markers identified through the detection of RNA or protein. Of these genes, 224 were annotated in the present dataset (Supplementary Table S2).
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The publication Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing by S. Lukassen, E. Bosch , A. B. Ekici & A. Winterpacht is published under an open access license: https://creativecommons.org/licenses/by/4.0/. Permits to share, copy and redistribute the material in any medium or format and to adapt, remix, transform, and build upon the material for any purpose, even commercially.
Curation by the MFGA team
Pie chart of selected column
Table
| GENE | Method | Source | Earlyspermatogonia | Latespermatogonia | Earlyspermatocytes | Latespermatocytes | Roundspermatids | Laterspermatids | Sertoli | Leydig |
|---|---|---|---|---|---|---|---|---|---|---|
| 1700013H16Rik | IHC | Shi; Y.-Q. et al. SYCP3-like X-linked 2 is expressed in meiotic germ cells and interacts with synaptonemal complex central element protein 2 and histone acetyltransferase TIP60. Gene 527; 352-359 (2013). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| 1700024P04Rik | Western | Govin; J. et al. Pericentric heterochromatin reprogramming by new histone variants during mouse spermiogenesis. J Cell Biol 176; 283-294 (2007). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Acrv1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Acrv1 | IHC | Osuru; H. P. et al. The acrosomal protein SP‐10 (Acrv1) is an ideal marker for staging of the cycle of seminiferous epithelium in the mouse. Molecular reproduction and development 81; 896-907 (2014). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Actb | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Actl11 | In situ | Oh; S. D. et al. The novel; actin‐like protein Tact3 is expressed in rodent testicular haploid germ cells. Molecular reproduction and development 80; 988- 999 (2013). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Adad1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Adam2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Adgra3 | Reporter | Seandel; M. et al. Generation of functional multipotent adult stem cells from GPR125+ germline progenitors. Nature 449; 346 (2007). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Akap4 | In situ | Mohapatra, B., Verma, S., Shankar, S. & Suri, A. Molecular cloning of human testis mRNA specifically expressed in haploid germ cells, having structural homology with the A-kinase anchoring proteins. Biochemical and biophysical research communications244, | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Bcl2l11 | In situ | Meehan; T.; Loveland; K.; de Kretser; D. & Cory; S. Developmental regulation of the bcl-2 family during spermatogenesis: Insights into the sterility of bcl- w−/− male mice. Cell death and differentiation 8; 225 (2001). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
| Bclb6b | IHC | Oatley; J. M.; Avarbock; M. R. & Brinster; R. L. 1 (2007). | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Bex1 | In situ | Yang; Q.-S. et al. Cloning and expression pattern of a spermatogenesis-related gene; BEX1; mapped to chromosome Xq22. Biochemical genetics 40; 1-12 (2002). [5 week old mice] | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Bik | In situ | Coultas; L. et al. Concomitant loss of proapoptotic BH3‐only Bcl‐2 antagonists Bik and Bim arrests spermatogenesis. The EMBO journal 24; 3963-3973 (2005). | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| Bmi1 | In situ | Zhang; S. et al. Expression localization of Bmi1 in mice testis. Molecular and cellular endocrinology 287; 47-56 (2008). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Bmi1 | IHC | Zhang; S. et al. Expression localization of Bmi1 in mice testis. Molecular and cellular endocrinology 287; 47-56 (2008). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Boll | IHC | Xu; E. Y.; Moore; F. L. & Pera; R. A. R. (2001). Chapman; D. L. & Wolgemuth; D. J. 7 (1994). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Brca1 | In situ | Blackshear; P. E. et al. Brca1 and Brca2 expression patterns in mitotic and meiotic cells of mice. Oncogene 16; 61 (1998). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Brca2 | In situ | Blackshear; P. E. et al. Brca1 and Brca2 expression patterns in mitotic and meiotic cells of mice. Oncogene 16; 61 (1998). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Brdt | In situ | Shang; E. et al. Identification of unique; differentiation stage-specific patterns of expression of the bromodomain-containing genes Brd2; Brd3; Brd4; and Brdt in the mouse testis. Gene expression patterns 4; 513-519 (2004). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Brdt | Reporter | Gaucher; J. et al. Bromodomain‐dependent stage‐specific male genome programming by Brdt. The EMBO journal 31; 3809-3820 (2012). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Bsg | In situ | Igakura; T. et al. A null mutation in basigin; an immunoglobulin superfamily member; indicates its important roles in peri-implantation development and spermatogenesis. Developmental biology 194; 152-165 (1998). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Camk4 | IHC | Wu; J. Y. & Means; A. R. Ca2+/calmodulin-dependent protein kinase IV is expressed in spermatids and targeted to chromatin and the nuclear matrix. Journal of Biological Chemistry 275; 7994-7999 (2000). | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
| Ccna1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Ccna1 | In situ | Sweeney; C. et al. A distinct cyclin A is expressed in germ cells in the mouse. Development 122; 53-64 (1996). | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| Ccna2 | In situ | Ravnik; S. E. & Wolgemuth; D. J. The Developmentally Restricted Pattern of Expression in the Male Germ Line of a MurineCyclin A; Cyclin A2; Suggests Roles in Both Mitotic and Meiotic Cell Cycles. Developmental biology 173; 69-78 (1996). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Ccna2 | IHC | Ravnik; S. E. & Wolgemuth; D. J. The Developmentally Restricted Pattern of Expression in the Male Germ Line of a MurineCyclin A; Cyclin A2; Suggests Roles in Both Mitotic and Meiotic Cell Cycles. Developmental biology 173; 69-78 (1996). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Ccnb1 | In situ | Chapman; D. L. & Wolgemuth; D. J. Identification of a mouse B‐type cyclin which exhibits developmentally regulated expression in the germ line. Molecular reproduction and development 33; 259-269 (1992). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Ccnb2 | In situ | Chapman; D. L. & Wolgemuth; D. J. (1993). | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| Ccnb3 | In situ | Nguyen; T. B. et al. Characterization and expression of mammalian cyclin b3; a prepachytene meiotic cyclin. Journal of Biological Chemistry 277; 41960- 41969 (2002). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Ccnd1 | IHC | Beumer; T. L.; Roepers-Gajadien; H. L.; Gademan; I. S.; Kal; H. B. & de Rooij; D. G. Involvement of the D-type cyclins in germ cell proliferation and differentiation in the mouse. Biology of reproduction 63; 1893-1898 (2000). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| Ccnd2 | IHC | Beumer; T. L.; Roepers-Gajadien; H. L.; Gademan; I. S.; Kal; H. B. & de Rooij; D. G. Involvement of the D-type cyclins in germ cell proliferation and differentiation in the mouse. Biology of reproduction 63; 1893-1898 (2000). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
| Ccnd3 | IHC | Beumer; T. L.; Roepers-Gajadien; H. L.; Gademan; I. S.; Kal; H. B. & de Rooij; D. G. Involvement of the D-type cyclins in germ cell proliferation and differentiation in the mouse. Biology of reproduction 63; 1893-1898 (2000). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Ccne1 | qPCR | Martinerie; L. et al. Mammalian E-type cyclins control chromosome pairing; telomere stability and CDK2 localization in male meiosis. PLoS genetics 10; e1004165 (2014). | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Ccne1 | IHC | Martinerie; L. et al. Mammalian E-type cyclins control chromosome pairing; telomere stability and CDK2 localization in male meiosis. PLoS genetics 10; e1004165 (2014). | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 |
| Ccne2 | qPCR | Martinerie; L. et al. Mammalian E-type cyclins control chromosome pairing; telomere stability and CDK2 localization in male meiosis. PLoS genetics 10; e1004165 (2014). | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Ccne2 | IHC | Martinerie; L. et al. Mammalian E-type cyclins control chromosome pairing; telomere stability and CDK2 localization in male meiosis. PLoS genetics 10; e1004165 (2014). | 0 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Cd9 | In situ | Ito; C. et al. Tetraspanin family protein CD9 in the mouse sperm: unique localization; appearance; behavior and fate during fertilization. Cell and tissue research 340; 583-594 (2010). | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| Cd9 | IHC | Kanatsu-Shinohara; M.; Toyokuni; S. & Shinohara; T. CD9 is a surface marker on mouse and rat male germline stem cells. Biology of reproduction 70; 70- 75 (2004). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Cdkn1c | IHC | Kubota; H.; Avarbock; M. R. & Brinster; R. L. Culture conditions and single growth factors affect fate determination of mouse spermatogonial stem cells. Biology of reproduction 71; 722-731 (2004). | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 1 |
| Chd5 | IHC | Li; W. et al. Chd5 orchestrates chromatin remodelling during sperm development. Nature communications 5; 3812 (2014). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Clgn | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Clgn | Northern | Pezzi; N. et al. STAG3; a novel gene encoding a protein involved in meiotic chromosome pairing and location of STAG3-related genes flanking the | 0 | 0 | 0 | 1 | 1 | 1 | ||
| Clock | IHC | Alvarez; J.; Chen; D.; Storer; E. & Sehgal; A. Non-cyclic and developmental stage-specific expression of circadian clock proteins during murine spermatogenesis. Biology of reproduction 69; 81-91 (2003). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Crabp1 | Northern | Zheng; W.; Bucco; R. A.; Schmitt; M. C.; Wardlaw; S. A. & Ong; D. E. Localization of cellular retinoic acid-binding protein (CRABP) II and CRABP in developing rat testis. Endocrinology 137; 5028-5035 (1996). [rat] | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Crabp1 | IHC | Zheng; W.; Bucco; R. A.; Schmitt; M. C.; Wardlaw; S. A. & Ong; D. E. Localization of cellular retinoic acid-binding protein (CRABP) II and CRABP in developing rat testis. Endocrinology 137; 5028-5035 (1996). [rat] | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Crem | In situ | Delmas; V.; Van der Hoorn; F.; Mellström; B.; Jegou; B. & Sassone-Corsi; P. Induction of CREM activator proteins in spermatids: down-stream targets and implications for haploid germ cell differentiation. Molecular endocrinology 7; 1502-1514 (1993). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Crisp2 | In situ | Mizuki; N.; Sarapata; D. E.; Garcia-Sanz; J. A. & Kasahara; M. (1992). | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Csf1 | Reporter | Ryan; G. R. et al. Rescue of the colony-stimulating factor 1 (CSF-1)–nullizygous mouse (Csf1 op/Csf1 op) phenotype with a CSF-1 transgene and identification of sites of local CSF-1 synthesis. Blood 98; 74-84 (2001). | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Cyp17a1 | IHC | Le Goascogne; C. et al. Immunoreactive cytochrome P-45017α in rat and guineapig gonads; adrenal glands and brain. Journal of reproduction and fertility 93; 609-622 (1991). [rat] | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Dazap1 | In situ | Vera; Y. et al. Deleted in azoospermia associated protein 1 shuttles between nucleus and cytoplasm during normal germ cell maturation. Journal of andrology 23; 622-628 (2002). | 1 | 1 | 1 | 0 | 0 | 0 | 1 | 0 |
| Dazap1 | IHC | Vera; Y. et al. Deleted in azoospermia associated protein 1 shuttles between nucleus and cytoplasm during normal germ cell maturation. Journal of andrology 23; 622-628 (2002). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Dazl | In situ | Niederberger; C.; Agulnik; A. I.; Cho; Y.; Lamb; D. & Bishop; C. E. In situ hybridization shows that Dazla expression in mouse testis is restricted to premeiotic stages IV-VI of spermatogenesis. Mammalian genome 8; 277-278 (1997). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Dazl | IHC | Ruggiu; M. et al. The mouse Dazla gene encodes a cytoplasmic protein essential for gametogenesis. Nature 389; 73 (1997). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Ddx25 | IHC | Sheng, Y., Tsai-Morris, C.-H. & Dufau, M. L. Cell-specific and hormone-regulated expression of gonadotropin-regulated testicular RNA helicase gene (GRTH/Ddx25) resulting from alternative utilization of translation initiation codons in the rat testis. Jour | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 1 |
| Ddx4 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Ddx4 | In situ | Fujiwara; Y. et al. Isolation of a DEAD-family protein gene that encodes a murine homolog of Drosophila vasa and its specific expression in germ cell lineage. Proceedings of the National Academy of Sciences 91; 12258-12262 (1994). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Ddx4 | IHC | Fujiwara; Y. et al. Isolation of a DEAD-family protein gene that encodes a murine homolog of Drosophila vasa and its specific expression in germ cell lineage. Proceedings of the National Academy of Sciences 91; 12258-12262 (1994). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Dll1 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Dll4 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 |
| Dmc1 | In situ | Habu; T.; Taki; T.; West; A.; Nishimune; Y. & Morita; T. (1996). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Dmc1 | IHC | Yoshida; K. et al. The mouse RecA-like gene Dmc1 is required for homologous chromosome synapsis during meiosis. Molecular cell 1; 707-718 (1998). | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| Dyrk1b | In situ | Sacher; F.; Möller; C.; Bone; W.; Gottwald; U. & Fritsch; M. (2007). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Dyrk2 | In situ | Sacher; F.; Möller; C.; Bone; W.; Gottwald; U. & Fritsch; M. (2007). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Dyrk3 | In situ | Sacher; F.; Möller; C.; Bone; W.; Gottwald; U. & Fritsch; M. (2007). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Dyrk4 | In situ | Sacher; F.; Möller; C.; Bone; W.; Gottwald; U. & Fritsch; M. (2007). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| E2f1 | In situ | Rotgers; E.; Nurmio; M.; Pietilä; E.; Cisneros‐Montalvo; S. & Toppari; J. E2F1 controls germ cell apoptosis during the first wave of spermatogenesis. Andrology 3; 1000-1014 (2015). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Epcam | Transplantation | Ryu; B.-Y.; Orwig; K. E.; Kubota; H.; Avarbock; M. R. & Brinster; R. L. Phenotypic and functional characteristics of spermatogonial stem cells in rats. Developmental biology 274; 158-170 (2004). [rat] | 1 | |||||||
| Esrp1 | qPCR | Saeidi; S. et al. Esrp1 is a marker of mouse fetal germ cells and differentially expressed during spermatogenesis. PloS one 13; e0190925 (2018). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Esrp1 | IHC | Saeidi; S. et al. Esrp1 is a marker of mouse fetal germ cells and differentially expressed during spermatogenesis. PloS one 13; e0190925 (2018). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Esx1 | In situ | Branford; W. W. et al. Spx1; a novel X-linked homeobox gene expressed during spermatogenesis. Mechanisms of development 65; 87-98 (1997). | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| Etv5 | IHC | Oatley; J. M.; Avarbock; M. R. & Brinster; R. L. 1 (2007). | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Ezh1 | In situ | Mu; W.; Starmer; J.; Shibata; Y.; Yee; D. & Magnuson; T. EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis. Developmental biology 424; 198-207 (2017). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Fer | In situ | Keshet; E.; Itin; A.; Fischman; K. & Nir; U. The testis-specific transcript (ferT) of the tyrosine kinase FER is expressed during spermatogenesis in a stage- specific manner. Molecular and Cellular Biology 10; 5021-5025 (1990). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Figla | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 0 | 0 | 0 | 0 | ||
| Foxj1 | IHC | Miao; H.; Miao; C. X.; Li; N. & Han; J. FOXJ2 controls meiosis during spermatogenesis in male mice. Molecular reproduction and development 83; 684- 691 (2016). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Gapdhs | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Gata1 | IHC | Yomogida; K. et al. Developmental stage-and spermatogenic cycle-specific expression of transcription factor GATA-1 in mouse Sertoli cells. Development 120; 1759-1766 (1994). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Gfra1 | In situ | Meng; X. et al. Regulation of cell fate decision of undifferentiated spermatogonia by GDNF. Science 287; 1489-1493 (2000). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Gk2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Gpat2 | In situ | Garcia-Fabiani; M. B. et al. Methylation of the Gpat2 promoter regulates transient expression during mouse spermatogenesis. Biochemical Journal 471; 211-220 (2015). | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| Gsg2 | IHC | Tanaka; H. et al. Identification and characterization of a haploid germ cell-specific nuclear ProteinKinase (haspin) in spermatid nuclei and its effects on somatic cells. Journal of Biological Chemistry 274; 17049-17057 (1999). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Gsg2 | qPCR | Takabayashi; S.; Yamauchi; Y.; Tsume; M.; Noguchi; M. & Katoh; H. A spontaneous smc1b mutation causes cohesin protein dysfunction and sterility in mice. Experimental Biology and Medicine 234; 994-1001 (2009). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Gykl1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| H1fnt | qPCR | Tanaka; H. et al. HANP1/H1T2; a novel histone H1-like protein involved in nuclear formation and sperm fertility. Molecular and cellular biology 25; 7107-7119 (2005). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| H1fnt | IHC | Tanaka; H. et al. HANP1/H1T2; a novel histone H1-like protein involved in nuclear formation and sperm fertility. Molecular and cellular biology 25; 7107-7119 (2005). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| H3f3a | In situ | Bramlage; B.; Kosciessa; U. & Doenecke; D. Differential expression of the murine histone genes H3. 3A and H3. 3B. Differentiation 62; 13-20 (1997). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| H3f3b | In situ | Bramlage; B.; Kosciessa; U. & Doenecke; D. (1997). Wang; P. J. & Pan; J. (2007). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hils1 | In situ | Iguchi; N.; Tanaka; H.; Yomogida; K. & Nishimune; Y. (2003). | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Hils1 | IHC | Iguchi; N.; Tanaka; H.; Yomogida; K. & Nishimune; Y. (2003). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Hist1h1a | In situ | Rabini; S. et al. (2000). Sun; R. & Qi; H. (2014). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hist1h1a | IHC | Rabini; S. et al. (2000). Sun; R. & Qi; H. (2014). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hist1h1a | In situ | Fu; X.-F. et al. DAZ family proteins; key players for germ cell development. International journal of biological sciences 11; 1226 (2015). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Hist1h1t | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Hist1h1t | In situ | Drabent; B.; Bode; C.; Bramlage; B. & Doenecke; D. Expression of the mouse testicular histone gene H1t during spermatogenesis. Histochemistry and cell biology 106; 247-251 (1996). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hist1h1t | IHC | Drabent; B.; Bode; C.; Bramlage; B. & Doenecke; D. Expression of the mouse testicular histone gene H1t during spermatogenesis. Histochemistry and cell biology 106; 247-251 (1996). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Hist1h3a | In situ | Fu; X.-F. et al. DAZ family proteins; key players for germ cell development. International journal of biological sciences 11; 1226 (2015). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Hist1h4i | In situ | Fu; X.-F. et al. DAZ family proteins; key players for germ cell development. International journal of biological sciences 11; 1226 (2015). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hormad1 | IHC | Wojtasz; L. et al. Mouse HORMAD1 and HORMAD2; two conserved meiotic chromosomal proteins; are depleted from synapsed chromosome axes with the help of TRIP13 AAA-ATPase. PLoS genetics 5; e1000702 (2009). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hormad2 | IHC | Wojtasz; L. et al. Mouse HORMAD1 and HORMAD2; two conserved meiotic chromosomal proteins; are depleted from synapsed chromosome axes with the help of TRIP13 AAA-ATPase. PLoS genetics 5; e1000702 (2009). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hsd17b11 | In situ | O’Shaughnessy; P.; Baker; P.; Heikkila; M.; Vainio; S. & McMahon; A. (2000). | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Hsd3b6 | In situ | Baker; P. J. et al. Expression of 3β‐hydroxysteroid dehydrogenase type I and type VI isoforms in the mouse testis during development. The FEBS Journal 260; 911-917 (1999). | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Hsf2 | In situ | Sarge; K. D.; Park-Sarge; O.-K.; Kirby; J. D.; Mayo; K. E. & Morimoto; R. I. Expression of heat shock factor 2 in mouse testis: potential role as a regulator | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Hspa1l | In situ | Tsunekawa; N.; Matsumoto; M.; Tone; S.; Nishida; T. & Fujimoto; H. The Hsp70 homolog gene; Hsc70t; is expressed under translational control during mouse spermiogenesis. Molecular reproduction and development 52; 383-391 (1999). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Hspa1l | IHC | Tsunekawa; N.; Matsumoto; M.; Tone; S.; Nishida; T. & Fujimoto; H. The Hsp70 homolog gene; Hsc70t; is expressed under translational control during mouse spermiogenesis. Molecular reproduction and development 52; 383-391 (1999). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Hspa2 | In situ | Dix; D. J. et al. Developmentally Regulated Expression ofHsp70-2and aHsp70-2/lacZTransgene during Spermatogenesis. Developmental biology 174; 310-321 (1996). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Hspa2 | IHC | Dix; D. J. et al. Developmentally Regulated Expression ofHsp70-2and aHsp70-2/lacZTransgene during Spermatogenesis. Developmental biology 174; 310-321 (1996). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Id1 | IHC | Sablitzky; F. et al. Stage-and subcellular-specific expression of Id proteins in male germ and Sertoli cells implicates distinctive regulatory roles for Id proteins during meiosis; spermatogenesis; and Sertoli cell function. Development 29; 30 (1998). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Id2 | IHC | Sablitzky; F. et al. Stage-and subcellular-specific expression of Id proteins in male germ and Sertoli cells implicates distinctive regulatory roles for Id proteins during meiosis; spermatogenesis; and Sertoli cell function. Development 29; 30 (1998). | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 |
| Id3 | IHC | Sablitzky; F. et al. Stage-and subcellular-specific expression of Id proteins in male germ and Sertoli cells implicates distinctive regulatory roles for Id proteins during meiosis; spermatogenesis; and Sertoli cell function. Development 29; 30 (1998). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Id4 | IHC | Sablitzky; F. et al. Stage-and subcellular-specific expression of Id proteins in male germ and Sertoli cells implicates distinctive regulatory roles for Id proteins during meiosis; spermatogenesis; and Sertoli cell function. Development 29; 30 (1998). | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| Id4 | IHC | Oatley; M. J.; Kaucher; A. V.; Racicot; K. E. & Oatley; J. M. (2011). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Itga6 | Transplantation | Shinohara; T.; Avarbock; M. R. & Brinster; R. L. β1-and α6-integrin are surface markers on mouse spermatogonial stem cells. Proceedings of the National Academy of Sciences 96; 5504-5509 (1999). | 1 | NA | NA | NA | NA | NA | ||
| Itga6 | IHC | Sá; R.; Miranda; C.; Carvalho; F.; Barros; A. & Sousa; M. Expression of stem cell markers: OCT4; KIT; ITGA6; and ITGB1 in the male germinal epithelium. Systems biology in reproductive medicine 59; 233-243 (2013). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
| Itgb1 | Transplantation | Shinohara; T.; Avarbock; M. R. & Brinster; R. L. β1-and α6-integrin are surface markers on mouse spermatogonial stem cells. Proceedings of the National Academy of Sciences 96; 5504-5509 (1999). | 1 | NA | NA | NA | NA | NA | ||
| Itgb1 | IHC | Sá; R.; Miranda; C.; Carvalho; F.; Barros; A. & Sousa; M. Expression of stem cell markers: OCT4; KIT; ITGA6; and ITGB1 in the male germinal epithelium. Systems biology in reproductive medicine 59; 233-243 (2013). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 |
| Jag1 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
| Kdm3a | IHC | Liu; Z. et al. Jmjd1a demethylase-regulated histone modification is essential for cAMP-response element modulator-regulated gene expression and spermatogenesis. Journal of Biological Chemistry 285; 2758-2770 (2010). | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| Kdm3a | IHC | Okada; Y.; Scott; G.; Ray; M. K.; Mishina; Y. & Zhang; Y. Histone demethylase JHDM2A is critical for Tnp1 and Prm1 transcription and spermatogenesis. Nature 450; 119 (2007). | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 |
| Khdrbs1 | IHC | Paronetto; M. P. et al. The nuclear RNA-binding protein Sam68 translocates to the cytoplasm and associates with the polysomes in mouse spermatocytes. Molecular biology of the cell 17; 14-24 (2006). | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 |
| Kit | In situ | Manova; K.; Nocka; K.; Besmer; P. & Bachvarova; R. F. Gonadal expression of c-kit encoded at the W locus of the mouse. Development 110; 1057-1069 (1990). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 1 |
| Kitl | IHC | Manova; K. et al. The expression pattern of the c-kit ligand in gonads of mice supports a role for the c-kit receptor in oocyte growth and in proliferation of spermatogonia. Developmental biology 157; 85-99 (1993). [Sertoli cells until P9 are positive, no | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Kitl | In situ | Manova; K. et al. The expression pattern of the c-kit ligand in gonads of mice supports a role for the c-kit receptor in oocyte growth and in proliferation of spermatogonia. Developmental biology 157; 85-99 (1993). [Sertoli cells until P9 are positive, no | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Klf17 | In situ | Yan; W.; Burns; K. H.; Ma; L. & Matzuk; M. M. Identification of Zfp393; a germ cell-specific gene encoding a novel zinc finger protein. Mechanisms of development 118; 233-239 (2002). | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Ldhc | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Ldhc | IHC | Hintz; M. & Goldberg; E. Immunohistochemical localization of LDH-X during spermatogenesis in mouse testes. Developmental biology 57; 375-384 (1977). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Lhx1 | IHC | Oatley; J. M.; Avarbock; M. R. & Brinster; R. L. (2007). | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Limk2 | In situ | Takahashi; H.; Koshimizu; U. & Nakamura; T. A novel transcript encoding truncated LIM kinase 2 is specifically expressed in male germ cells undergoing meiosis. Biochemical and biophysical research communications 249; 138-145 (1998). | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| Lin28a | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 0 | 0 | 0 | 0 | ||
| Lin28a | IHC | Zheng; K.; Wu; X.; Kaestner; K. H. & Wang; P. J. The pluripotency factor LIN28 marks undifferentiated spermatogonia in mouse. BMC developmental biology 9; 38 (2009). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Magea5 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Mak | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Mea1 | In situ | Kondo; M. et al. Genomic sequence analysis of the bovine male-enhanced antigen-1 (Mea-1) and differential localization of its transcripts and products during spermatogenesis. DNA Sequence 6; 75-85 (1996). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Mea1 | IHC | Kondo; M. et al. Genomic sequence analysis of the bovine male-enhanced antigen-1 (Mea-1) and differential localization of its transcripts and products during spermatogenesis. DNA Sequence 6; 75-85 (1996). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Meig1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Meig1 | IHC | Watanabe; D.; Sawada; K.; Koshimizu; U.; Kagawa; T. & Nishimune; Y. Characterization of male meiotic germ cell‐specific antigen (Meg 1) by monoclonal antibody TRA 369 in mice. Molecular reproduction and development 33; 307-312 (1992). | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| Meiob | In situ | Kogo; H. et al. (2010). Souquet; B. et al. (2013). | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| Meioc | IHC | Soh; Y. S. et al. Meioc maintains an extended meiotic prophase I in mice. PLoS genetics 13; e1006704 (2017). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Mitf | In situ | Saito; H. et al. Germ cell-specific expression of microphthalmia-associated transcription factor mRNA in mouse testis. Journal of biochemistry 134; 143- 150 (2003). | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| Mov10l1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Mov10l1 | In situ | Frost; R. J. et al. MOV10L1 is necessary for protection of spermatocytes against retrotransposons by Piwi-interacting RNAs. Proceedings of the National Academy of Sciences 107; 11847-11852 (2010). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Msh4 | qPCR | Santucci‐Darmanin; S.; Vidal; F.; Scimeca; J. C.; Turc‐Carel; C. & Paquis‐Flucklinger; V. (2001). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Nanos3 | IHC | Suzuki; H.; Sada; A.; Yoshida; S. & Saga; Y. The heterogeneity of spermatogonia is revealed by their topology and expression of marker proteins including the germ cell-specific proteins Nanos2 and Nanos3. Developmental biology 336; 222-231 (2009). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Nek2 | IHC | Rhee; K. & Wolgemuth; D. J. The NIMA-related kinase 2; Nek2; is expressed in specific stages of the meiotic cell cycle and associates with meiotic chromosomes. Development 124; 2167-2177 (1997). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Nek2 | In situ | Arama; E.; Yanai; A.; Kilfin; G.; Bernstein; A. & Motro; B. Murine NIMA-related kinases are expressed in patterns suggesting distinct functions in | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Ngn3 | In situ | Yoshida; S. et al. Neurogenin3 delineates the earliest stages of spermatogenesis in the mouse testis. Developmental biology 269; 447-458 (2004). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Nlrp4c | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 0 | 0 | ||
| Nos2 | IHC | Suzuki; H.; Sada; A.; Yoshida; S. & Saga; Y. The heterogeneity of spermatogonia is revealed by their topology and expression of marker proteins including the germ cell-specific proteins Nanos2 and Nanos3. Developmental biology 336; 222-231 (2009). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Notch1 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 0 |
| Notch2 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Notch3 | IHC | Murta; D. et al. Dynamics of Notch pathway expression during mouse testis post-natal development and along the spermatogenic cycle. PloS one 8; e72767 (2013). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Nr6a1 | In situ | Bauer; U.-M.; Schneider-Hirsch; S.; Reinhardt; S.; Benavente; R. & Maelicke; A. The murine nuclear orphan receptor GCNF is expressed in the XY body of primary spermatocytes. FEBS letters 439; 208-214 (1998). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Nr6a1 | IHC | Bauer; U.-M.; Schneider-Hirsch; S.; Reinhardt; S.; Benavente; R. & Maelicke; A. The murine nuclear orphan receptor GCNF is expressed in the XY body of primary spermatocytes. FEBS letters 439; 208-214 (1998). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Nxf2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Nxf2 | IHC | Wang; P. J. & Pan; J. The role of spermatogonially expressed germ cell-specific genes in mammalian meiosis. Chromosome research 15; 623-632 (2007). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Ovol1 | In situ | Li; B. et al. Ovol1 regulates meiotic pachytene progression during spermatogenesis by repressing Id2 expression. Development 132; 1463-1473 (2005). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Pabpc2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Pbx4 | In situ | Wagner; K.; Mincheva; A.; Korn; B.; Lichter; P. & Pöpperl; H. Pbx4; a new Pbx family member on mouse chromosome 8; is expressed during spermatogenesis. Mechanisms of development 103; 127-131 (2001). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pbx4 | IHC | Wagner; K.; Mincheva; A.; Korn; B.; Lichter; P. & Pöpperl; H. Pbx4; a new Pbx family member on mouse chromosome 8; is expressed during spermatogenesis. Mechanisms of development 103; 127-131 (2001). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pcna | IHC | Watanabe; D. et al. Molecular cloning of a novel Ca (2+)-binding protein (calmegin) specifically expressed during male meiotic germ cell development. Journal of Biological Chemistry 269; 7744-7749 (1994). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Pcna | Western | Watanabe; D. et al. Molecular cloning of a novel Ca (2+)-binding protein (calmegin) specifically expressed during male meiotic germ cell development. Journal of Biological Chemistry 269; 7744-7749 (1994). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Pdha2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Per1 | IHC | Alvarez; J.; Chen; D.; Storer; E. & Sehgal; A. Non-cyclic and developmental stage-specific expression of circadian clock proteins during murine spermatogenesis. Biology of reproduction 69; 81-91 (2003). | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| Pgk1 | In situ | Goto; M. et al. Transcription switch of two phosphoglycerate kinase genes during spermatogenesis as determined with mouse testis sections in situ. Experimental cell research 186; 273-278 (1990). | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 |
| Pgk2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Pgk2 | In situ | Goto; M. et al. Transcription switch of two phosphoglycerate kinase genes during spermatogenesis as determined with mouse testis sections in situ. Experimental cell research 186; 273-278 (1990). | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| Phf5a | IHC | Rzymski; T.; Grzmil; P.; Meinhardt; A.; Wolf; S. & Burfeind; P. (2008). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pin1 | IHC | Atchison; F. W. & Means; A. R. Spermatogonial depletion in adult Pin1-deficient mice. Biology of reproduction 69; 1989-1997 (2003). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 |
| Piwil1 | IHC | Kuramochi-Miyagawa; S. et al. Mili; a mammalian member of piwi family gene; is essential for spermatogenesis. Development 131; 839-849 (2004). | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 0 |
| Piwil2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 0 | 0 | ||
| Piwil2 | IHC | Kuramochi-Miyagawa; S. et al. Mili; a mammalian member of piwi family gene; is essential for spermatogenesis. Development 131; 839-849 (2004). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pmfbp1 | In situ | Ohuchi; J. et al. Characterization of a novel gene; sperm‐tail‐associated protein (Stap); in mouse post‐meiotic testicular germ cells. Molecular reproduction and development 59; 350-358 (2001). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Poteg | In situ | Wang; F.; Hu; J.; Song; P. & Gong; W. Two novel transcripts encoding two Ankyrin repeat containing proteins have preponderant expression during the mouse spermatogenesis. Molecular biology reports 34; 249-260 (2007). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pou5f1 | IHC | Pesce; M.; Wang; X.; Wolgemuth; D. J. & Schöler; H. R. Differential expression of the Oct-4 transcription factor during mouse germ cell differentiation. Mechanisms of development 71; 89-98 (1998). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Pou5f1 | Reporter | Ohmura; M. et al. Spatial analysis of germ stem cell development in Oct-4/EGFP transgenic mice. Archives of histology and cytology 67; 285-296 (2004). | 1 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Pou5f2 | In situ | Andersen; B. et al. Sperm 1: a POU-domain gene transiently expressed immediately before meiosis I in the male germ cell. Proceedings of the National Academy of Sciences 90; 11084-11088 (1993). | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| Pramel1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 0 | 0 | ||
| Pramel1 | IHC | Mistry; B. V. et al. Differential expression of PRAMEL1; a cancer/testis antigen; during spermatogenesis in the mouse. PloS one 8; e60611 (2013). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Pramel3 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Prm1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 0 | 0 | 1 | 1 | ||
| Prm1 | In situ | Caldwell; K. A. & Handel; M. A. Protamine transcript sharing among postmeiotic spermatids. Proceedings of the National Academy of Sciences 88; 2407-2411 (1991). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Prss42 | In situ | Yoneda; R. et al. Three testis-specific paralogous serine proteases play different roles in murine spermatogenesis and are involved in germ cell survival during meiosis. Biology of reproduction 88 (2013). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Prss42 | IHC | Yoneda; R. et al. Three testis-specific paralogous serine proteases play different roles in murine spermatogenesis and are involved in germ cell survival during meiosis. Biology of reproduction 88 (2013). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Prss43 | In situ | Yoneda; R. et al. Three testis-specific paralogous serine proteases play different roles in murine spermatogenesis and are involved in germ cell survival during meiosis. Biology of reproduction 88 (2013). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Prss43 | IHC | Yoneda; R. et al. Three testis-specific paralogous serine proteases play different roles in murine spermatogenesis and are involved in germ cell survival during meiosis. Biology of reproduction 88 (2013). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Prss44 | In situ | Yoneda; R. et al. Three testis-specific paralogous serine proteases play different roles in murine spermatogenesis and are involved in germ cell survival during meiosis. Biology of reproduction 88 (2013). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Ptch1 | IHC | Mäkelä; J.-A. et al. Hedgehog signalling promotes germ cell survival in the rat testis. Reproduction 142; 711-721 (2011). [rat] | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Pygo2 | IHC | Nair; M. et al. Nuclear regulator Pygo2 controls spermiogenesis and histone H3 acetylation. Developmental biology 320; 446-455 (2008). | 1 | 1 | 0 | 0 | 0 | 1 | 1 | 1 |
| Rad21 | In situ | Lee; J.; Yokota; T. & Yamashita; M. Analyses of mRNA expression patterns of cohesin subunits Rad21 and Rec8 in mice: Germ cell-specific expression of rec8 mRNA in both male and female mice. Zoological science 19; 539-544 (2002). | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
| Rad51 | IHC | Yamamoto; A. et al. Cell cycle-dependent expression of the mouseRad51 gene in proliferating cells. Molecular and General Genetics MGG 251; 1-12 (1996). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Rec8 | In situ | Lee; J.; Yokota; T. & Yamashita; M. Analyses of mRNA expression patterns of cohesin subunits Rad21 and Rec8 in mice: Germ cell-specific expression of rec8 mRNA in both male and female mice. Zoological science 19; 539-544 (2002). [mouse] | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Rec8 | IHC | Eijpe; M.; Offenberg; H.; Jessberger; R.; Revenkova; E. & Heyting; C. Meiotic cohesin REC8 marks the axial elements of rat synaptonemal complexes before cohesins SMC1β and SMC3. The Journal of cell biology 160; 657-670 (2003). [rat] | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Ret | IHC | Naughton; C. K.; Jain; S.; Strickland; A. M.; Gupta; A. & Milbrandt; J. Glial cell-line derived neurotrophic factor-mediated RET signaling regulates spermatogonial stem cell fate. Biology of reproduction 74; 314-321 (2006). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Rexo1 | In situ | Rogers; M. B.; Hosler; B. A. & Gudas; L. J. Specific expression of a retinoic acid-regulated; zinc-finger gene; Rex-1; in preimplantation embryos; trophoblast and spermatocytes. Development 113; 815-824 (1991). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Rexo1 | IHC | Kristensen; D. M. et al. Presumed pluripotency markers UTF-1 and REX-1 are expressed in human adult testes and germ cell neoplasms. Humanreproduction 23; 775-782 (2008). [human] | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Rhox5 | In situ | Lindsey; J. S. & Wilkinson; M. F. Pem: a testosterone-and LH-regulated homeobox gene expressed in mouse Sertoli cells and epididymis. Developmental biology 179; 471-484 (1996). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Rnf17 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Rnf17 | IHC | Pan; J. et al. RNF17; a component of the mammalian germ cell nuage; is essential for spermiogenesis. Development 132; 4029-4039 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Sall4 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 0 | 0 | ||
| Scml2 | IHC | Luo; M. et al. Polycomb protein SCML2 associates with USP7 and counteracts histone H2A ubiquitination in the XY chromatin during male meiosis. PloS genetics 11; e1004954 (2015). | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| Slx | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Slx | In situ | Reynard; L. N. et al. Expression analysis of the mouse multi-copy X-linked gene Xlr-related; meiosis-regulated (Xmr); reveals that Xmr encodes a spermatid-expressed cytoplasmic protein; SLX/XMR. Biology of reproduction 77; 329-335 (2007). | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Slx | IHC | Reynard; L. N. et al. Expression analysis of the mouse multi-copy X-linked gene Xlr-related; meiosis-regulated (Xmr); reveals that Xmr encodes a spermatid-expressed cytoplasmic protein; SLX/XMR. Biology of reproduction 77; 329-335 (2007). | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| Slxl1 | IHC | Zhuang; X.-j. et al. SLXL1; a novel acrosomal protein; interacts with DKKL1 and is involved in fertilization in mice. PloS one 6; e20866 (2011). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Sly | qPCR | Cocquet; J. et al. The multicopy gene Sly represses the sex chromosomes in the male mouse germline after meiosis. PLoS biology 7; e1000244 (2009). | 0 | 0 | 0 | 0 | 1 | 1 | ||
| Sly | In situ | Reynard; L. N.; Cocquet; J. & Burgoyne; P. S. (2009). | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 |
| Sly | IHC | Reynard; L. N.; Cocquet; J. & Burgoyne; P. S. (2009). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Smad1 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| Smad4 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 |
| Smad5 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 |
| Smad6 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| Smad6 | IHC | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| Smad7 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 0 |
| Smad9 | In situ | Itman; C. & Loveland; K. L. SMAD expression in the testis: an insight into BMP regulation of spermatogenesis. Developmental dynamics 237; 97-111 (2008). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Smc1b | IHC | Revenkova; E.; Eijpe; M.; Heyting; C.; Gross; B. & Jessberger; R. Novel meiosis-specific isoform of mammalian SMC1. Molecular and cellular biology 21; 6984-6998 (2001). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Smcp | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Sohlh1 | IHC | Ballow; D.; Meistrich; M.; Matzuk; M. & Rajkovic; A. Sohlh1 is essential for spermatogonial differentiation. Developmental biology 294; 161-167 (2006). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Sohlh2 | IHC | Toyoda; S. et al. Sohlh2 affects differentiation of KIT positive oocytes and spermatogonia. Developmental biology 325; 238-248 (2009). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Sox3 | IHC | Raverot; G.; Weiss; J.; Park; S. Y.; Hurley; L. & Jameson; J. L. Sox3 expression in undifferentiated spermatogonia is required for the progression of spermatogenesis. Developmental biology 283; 215-225 (2005). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Sox8 | RNASeq | Roumaud; P.; Hache; J. & Martin; L. J. Expression profiles of Sox transcription factors within the postnatal rodent testes. Molecular and cellular biochemistry; doi:10.1007/s11010-018-3302-3 (2018). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Spa17 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Spata22 | IHC | Ishishita; S.; Matsuda; Y. & Kitada; K. Genetic evidence suggests that Spata22 is required for the maintenance of Rad51 foci in mammalian meiosis. Scientific reports 4; 6148 (2014). [rat] | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Spo11 | Northern | Shannon; M.; Richardson; L.; Christian; A.; Handel; M. A. & Thelen; M. P. Differential gene expression of mammalian SPO11/TOP6A homologs during meiosis. FEBS letters 462; 329-334 (1999). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Spz1 | In situ | Hsu; S.-H.; Shyu; H.-W.; Hsieh-Li; H.-M. & Li; H. Spz1; a novel bHLH-Zip protein; is specifically expressed in testis. Mechanisms of development 100; 177- 187 (2001). | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Stag3 | IHC | Williams-Beuren syndrome deletion. The FASEB Journal 14; 581-592 (2000). [monkey sections, mouse spreads] | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Stag3 | Northern | Williams-Beuren syndrome deletion. The FASEB Journal 14; 581-592 (2000). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Stat4 | In situ | Herrada; G. & Wolgemuth; D. J. The mouse transcription factor Stat4 is expressed in haploid male germ cells and is present in the perinuclear theca of spermatozoa. Journal of cell science 110; 1543-1553 (1997). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Stat4 | IHC | Herrada; G. & Wolgemuth; D. J. The mouse transcription factor Stat4 is expressed in haploid male germ cells and is present in the perinuclear theca of spermatozoa. Journal of cell science 110; 1543-1553 (1997). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Stk31 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Stk31 | IHC | Bao; J. et al. STK31 (TDRD8) is dynamically regulated throughout mouse spermatogenesis and interacts with MIWI protein. Histochemistry and cell biology 137; 377-389 (2012). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Stra8 | In situ | Oulad-Abdelghani; M. et al. Characterization of a premeiotic germ cell-specific cytoplasmic protein encoded by Stra8; a novel retinoic acid-responsive gene. The Journal of cell biology 135; 469-477 (1996). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Stra8 | IHC | Oulad-Abdelghani; M. et al. Characterization of a premeiotic germ cell-specific cytoplasmic protein encoded by Stra8; a novel retinoic acid-responsive gene. The Journal of cell biology 135; 469-477 (1996). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Sufu | IHC | Mäkelä; J.-A. et al. Hedgehog signalling promotes germ cell survival in the rat testis. Reproduction 142; 711-721 (2011). [rat] | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Syce1 | IHC | Costa; Y. et al. Two novel proteins recruited by synaptonemal complex protein 1 (SYCP1) are at the centre of meiosis. Journal of cell science 118; 2755- 2762 (2005). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Syce3 | IHC | Schramm; S. et al. A novel mouse synaptonemal complex protein is essential for loading of central element proteins; recombination; and fertility. PloS genetics 7; e1002088 (2011). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Sycp1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Sycp1 | Reporter | Sage; J. et al. Temporal and spatial control of the Sycp1 gene transcription in the mouse meiosis: regulatory elements active in the male are not sufficient for expression in the female gonad. Mechanisms of development 80; 29-39 (1999). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Sycp2 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 0 | 0 | ||
| Sycp3 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Taf3 | IHC | Pointud; J.-C. et al. The intracellular localisation of TAF7L; a paralogue of transcription factor TFIID subunit TAF7; is developmentally regulated during male germ-cell differentiation. Journal of cell science 116; 1847-1858 (2003). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Taf4b | IHC | Falender; A. E. et al. Maintenance of spermatogenesis requires TAF4b; a gonad-specific subunit of TFIID. Genes & development 19; 794-803 (2005). | 1 | 1 | 0 | 0 | 1 | 1 | ||
| Taf7 | IHC | Pointud; J.-C. et al. The intracellular localisation of TAF7L; a paralogue of transcription factor TFIID subunit TAF7; is developmentally regulated during male germ-cell differentiation. Journal of cell science 116; 1847-1858 (2003). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Taf7l | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Taf7l | IHC | Pointud; J.-C. et al. The intracellular localisation of TAF7L; a paralogue of transcription factor TFIID subunit TAF7; is developmentally regulated during male germ-cell differentiation. Journal of cell science 116; 1847-1858 (2003). | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 |
| Tbp | IHC | Pointud; J.-C. et al. The intracellular localisation of TAF7L; a paralogue of transcription factor TFIID subunit TAF7; is developmentally regulated during male germ-cell differentiation. Journal of cell science 116; 1847-1858 (2003). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Tdrd1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Tdrd1 | In situ | Chuma; S. et al. Mouse Tudor Repeat-1 (MTR-1) is a novel component of chromatoid bodies/nuages in male germ cells and forms a complex with snRNPs. Mechanisms of development 120; 979-990 (2003). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Tdrd1 | IHC | Chuma; S. et al. Mouse Tudor Repeat-1 (MTR-1) is a novel component of chromatoid bodies/nuages in male germ cells and forms a complex with snRNPs. Mechanisms of development 120; 979-990 (2003). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Tesk1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Tex11 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Tex11 | IHC | Adelman; C. A. & Petrini; J. H. ZIP4H (TEX11) deficiency in the mouse impairs meiotic double strand break repair and the regulation of crossing over. PLoS genetics 4; e1000042 (2008). | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Tex12 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 0 | 0 | ||
| Tex12 | IHC | Hamer; G. et al. Characterization of a novel meiosis-specific protein within the central element of the synaptonemal complex. Journal of cell science 119; 4025-4032 (2006). | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 |
| Tex14 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Tex14 | In situ | Wu; M.-H. et al. Sequence and expression of testis-expressed gene 14 (Tex14): a gene encoding a protein kinase preferentially expressed during spermatogenesis. Gene expression patterns 3; 231-236 (2003). | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| Tex14 | IHC | Greenbaum; M. P. et al. TEX14 is essential for intercellular bridges and fertility in male mice. Proceedings of the National Academy of Sciences of the United States of America 103; 4982-4987 (2006). | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 0 |
| Tex15 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 1 | 1 | ||
| Tex16 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 1 | 1 | 1 | ||
| Tex19.1 | In situ | Celebi; C. et al. Tex 19 paralogs exhibit a gonad and placenta-specific expression in the mouse. Journal of Reproduction and Development 58; 360-365 (2012). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Tex19.2 | In situ | Celebi; C. et al. Tex 19 paralogs exhibit a gonad and placenta-specific expression in the mouse. Journal of Reproduction and Development 58; 360-365 (2012). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Tex40 | In situ | Kogo; H. et al. Screening of genes involved in chromosome segregation during meiosis I: toward the identification of genes responsible for infertility in humans. Journal of human genetics 55; 293 (2010). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Tfcp2 | In situ | Maguire; S.; Millar; M.; Sharpe; R. & Saunders; P. Stage-dependent expression of mRNA for cyclic protein 2 during spermatogenesis is modulated by elongate spermatids. Molecular and cellular endocrinology 94; 79-88 (1993). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Tktl1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 1 | 1 | ||
| Tnp1 | In situ | Heidaran; M. A.; Showman; R. M. & Kistler; W. S. (1988). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Tnp1 | IHC | Heidaran; M. A.; Showman; R. M. & Kistler; W. S. (1988). | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| Tnp2 | In situ | Shih; D. & Kleene; K (1992). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Tob1 | In situ | Chapman; D. L. & Wolgemuth; D. J. (1993). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Tob1 | IHC | Shapouri; F. et al. Tob1 is expressed in developing and adult gonads and is associated with the P-body marker; Dcp2. Cell and tissue research 364; 443- 451 (2016). | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 0 |
| Top2a | IHC | Leduc; F.; Maquennehan; V.; Nkoma; G. B. & Boissonneault; G. DNA damage response during chromatin remodeling in elongating spermatids of mice. Biology of reproduction 78; 324-332 (2008). | 1 | 1 | 1 | 1 | 0 | 0 | 0 | 0 |
| Trim27 | IHC | Zhuang; X.-J. et al. Trim27 interacts with Slx2; is associated with meiotic processes during spermatogenesis. Cell Cycle 15; 2576-2584 (2016). | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 |
| Tuba3a | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| U2af1 | IHC | Rzymski; T.; Grzmil; P.; Meinhardt; A.; Wolf; S. & Burfeind; P. (2008). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Uba1 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 1 | 1 | ||
| Uba1y | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 1 | 1 | ||
| Uchl1 | IHC | Luo; J.; Megee; S. & Dobrinski; I. Asymmetric Distribution of UCH‐L1 in spermatogonia is associated with maintenance and differentiation of spermatogonial stem cells. Journal of cellular physiology 220; 460-468 (2009). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Usp26 | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 0 | 0 | ||
| Usp9y | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 1 | 1 | 1 | 0 | 1 | 1 | ||
| Utf1 | IHC | Kristensen; D. M. et al. Presumed pluripotency markers UTF-1 and REX-1 are expressed in human adult testes and germ cell neoplasms. Humanreproduction 23; 775-782 (2008). | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| Utp3 | In situ | Lim; J.-H. et al. Crlz-1 is prominently expressed in spermatogonia and Sertoli cells during early testis development and in spermatids during late spermatogenesis. Journal of Histochemistry & Cytochemistry 61; 522-528 (2013). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Vcam1 | IHC | Sainio-Pöllänen; S. et al. CD106 (VCAM-1) in testicular immunoregulation. Journal of reproductive immunology 33; 221-238 (1997). | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| Wdr33 | In situ | Ito; S. et al. A novel WD40 repeat protein; WDC146; highly expressed during spermatogenesis in a stage-specific manner. Biochemical and biophysical research communications 280; 656-663 (2001). [truncated transcript] | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 0 |
| Wsb2 | In situ | Sarraj; M. et al. Expression of Wsb2 in the developing and adult mouse testis. Reproduction 133; 753-761 (2007). | 1 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| Wt1 | In situ | Pelletier; J. et al. Expression of the Wilms tumor gene WT1 in the murine urogenital system. Genes & development 5; 1345-1356 (1991). | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| Ybx2 | Northern | Gu; W. et al. Mammalian male and female germ cells express a germ cell-specific Y-Box protein; MSY2. Biology of reproduction 59; 1266-1274 (1998). | 0 | 0 | 1 | 1 | 1 | 0 | ||
| Zbtb16 | In situ | Costoya; J. A. et al. Essential role of Plzf in maintenance of spermatogonial stem cells. Nature genetics 36; 653 (2004). Buaas; F. W. et al. Plzf is required in adult male germ cells for stem cell self-renewal. Nature genetics 36; 647 (2004). | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Zfa-ps | qPCR | Wang; P. J.; Page; D. C. & McCarrey; J. R. Differential expression of sex-linked and autosomal germ-cell-specific genes during spermatogenesis in the mouse. Human molecular genetics 14; 2911-2918 (2005). | 0 | 0 | 1 | 1 | 1 | 1 | ||
| Zfp318 | In situ | Inoue; A. et al. The transcript for a novel protein with a zinc finger motif is expressed at specific stages of mouse spermatogenesis. Biochemical and biophysical research communications 273; 398-403 (2000). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Zfp318 | qPCR | Inoue; A. et al. The transcript for a novel protein with a zinc finger motif is expressed at specific stages of mouse spermatogenesis. Biochemical and biophysical research communications 273; 398-403 (2000). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Zfp35 | Northern | Cunliffe; V.; Koopman; P.; McLaren; A. & Trowsdale; J. A mouse zinc finger gene which is transiently expressed during spermatogenesis. The EMBO journal 9; 197-205 (1990). | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 |
| Zfp59 | Northern | Passananti; C. et al. (1995). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Zfp59 | IHC | Passananti; C. et al. (1995). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Zfy1 | IHC | Decarpentrie; F. et al. Human and mouse ZFY genes produce a conserved testis-specific transcript encoding a zinc finger protein with a short acidic domain and modified transactivation potential. Human molecular genetics 21; 2631-2645 (2012). | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 |
| Zfy2 | In situ | Decarpentrie; F. et al. Human and mouse ZFY genes produce a conserved testis-specific transcript encoding a zinc finger protein with a short acidic domain and modified transactivation potential. Human molecular genetics 21; 2631-2645 (2012). | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 0 |
| Zmynd15 | In situ | Yan; W. et al. Zmynd15 encodes a histone deacetylase-dependent transcriptional repressor essential for spermiogenesis and male fertility. Journal of Biological Chemistry 285; 31418-31426 (2010). | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 |
| Zmynd15 | IHC | Yan; W. et al. Zmynd15 encodes a histone deacetylase-dependent transcriptional repressor essential for spermiogenesis and male fertility. Journal of Biological Chemistry 285; 31418-31426 (2010). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |
| Znrf4 | In situ | Fujii; T. et al. Sperizin is a murine RING zinc-finger protein specifically expressed in haploid germ cells. Genomics 57; 94-101 (1999). | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 |