Supplementary table S6
LUKASSEN, Soeren, et al. Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing. Scientific reports, 2018, 8. Jg., Nr. 1, S. 6521-6521.
Publication: https://doi.org/10.1038/s41598-018-24725-0
Description
QC statistics for single-cell sequencing are listed in Supplementary data Table S6.
Disclaimer
The publication Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing by S. Lukassen, E. Bosch , A. B. Ekici & A. Winterpacht is published under an open access license: https://creativecommons.org/licenses/by/4.0/. Permits to share, copy and redistribute the material in any medium or format and to adapt, remix, transform, and build upon the material for any purpose, even commercially.
Curation by the MFGA team
Pie chart of selected column
Table
| QCParameter | Mouse1 | Mouse2 |
|---|---|---|
| Estimated cell count | 1237 | 1315 |
| Number of reads produced | 199284287 | 198383896 |
| Mean reads per cell* | 53003 | 55970 |
| % reads mapped to transcriptome | 62.1 | 64.6 |
| % mapped to exons | 66.7 | 68.7 |
| % mapped intronic | 4 | 3.9 |
| % mapped antisense | 5 | 4.8 |
| % mapped intergenic | 4.7 | 4.4 |
| % Sequencing saturation** | 31.2 | 30.4 |
| Median UMIs per cell | 17871 | 20456 |
| Median genes per cell | 4405 | 4711 |
| Total genes detected | 25540 | 26070 |
| % Q30 bases in RNA read | 82.5 | 83.8 |