Table S1, related to Figure 1 C: Mouse Top Ten Differentially Expressed Genes (DEGs) between Cell Clusters
HERMANN, Brian P., et al. The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids. Cell reports, 2018, 25. Jg., Nr. 6, S. 1650-1667. e8.
Publication: https://doi.org/10.1016/j.celrep.2018.10.026
Description
Disclaimer
The publication The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids by Brian P. Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N. Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D. Lehle, Max Mayo, Birgit Westernströer, Nathan C. Law, Melissa J. Oatley, Ellen K. Velte, Bryan A. Niedenberger, Danielle Fritze, Sherman Silber, Christopher B. Geyer, Jon M. Oatley, John R. McCarrey is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.
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Table
| GENE | PVALUE | No | Avg_logfc | Pct.1 | Pct.2 | P_val_adj | Cluster |
|---|---|---|---|---|---|---|---|
| Tnp2 | 1.840000e-303 | 1 | 1.61723579239121 | 1 | 1 | 3.85E-299 | 1 |
| Tnp1 | 2.400000e-296 | 2 | 1.69604541548687 | 1 | 1 | 5.03E-292 | 1 |
| Hmgb4 | 1.820000e-285 | 3 | 1.41726577060513 | 1 | 0.954 | 3.82E-281 | 1 |
| Tex37 | 1.070000e-281 | 4 | 1.43709741269785 | 1 | 0.674 | 2.24E-277 | 1 |
| Galntl5 | 2.930000e-267 | 5 | 1.17696862834703 | 1 | 0.794 | 6.13E-263 | 1 |
| Actrt2 | 3.690000e-263 | 6 | 1.20616337170344 | 1 | 0.816 | 7.73E-259 | 1 |
| 1700034E13Rik | 6.030000e-258 | 7 | 1.28572080297571 | 1 | 0.71 | 1.26E-253 | 1 |
| Tfam | 1.320000e-241 | 10 | 1.28041160359963 | 1 | 0.697 | 2.77E-237 | 1 |
| Cstl1 | 2.800000e-231 | 12 | 1.20367977702731 | 1 | 0.624 | 5.87E-227 | 1 |
| Prm1 | 1.300000e-223 | 13 | 1.28325284208463 | 1 | 1 | 2.72E-219 | 1 |
| 1700001F09Rik | 8.040000e-269 | 16 | 1.17927264562961 | 0.967 | 0.357 | 1.68E-264 | 2 |
| Gm10376 | 2.990000e-228 | 17 | 0.962800249424997 | 0.96 | 0.381 | 6.27E-224 | 2 |
| Dynlt1a | 1.080000e-202 | 19 | 1.03489981949398 | 0.994 | 0.566 | 2.27E-198 | 2 |
| Dynlt1f | 2.140000e-201 | 20 | 1.03487838840002 | 0.996 | 0.661 | 4.47E-197 | 2 |
| Ccdc113 | 5.430000e-195 | 21 | 0.949786339751825 | 1 | 0.733 | 1.14E-190 | 2 |
| Tbpl1 | 7.410000e-191 | 23 | 1.02211002061215 | 1 | 0.83 | 1.55E-186 | 2 |
| Gm3448 | 3.940000e-190 | 24 | 0.947764428253257 | 1 | 0.923 | 8.25E-186 | 2 |
| Gkap1 | 2.840000e-175 | 27 | 0.977060892627324 | 1 | 0.94 | 5.95E-171 | 2 |
| Pbp2 | 3.140000e-166 | 29 | 0.946078049467353 | 0.985 | 0.706 | 6.57E-162 | 2 |
| AA467197 | 5.820000e-166 | 30 | 1.0370470577568 | 0.996 | 0.909 | 1.22E-161 | 2 |
| Cypt1 | 5.150000e-254 | 31 | 1.5056132246343 | 1 | 0.754 | 1.08E-249 | 3 |
| Prss58 | 4.730000e-245 | 32 | 1.30895792714483 | 1 | 0.517 | 9.90E-241 | 3 |
| Tmco2 | 1.690000e-244 | 33 | 1.37361204720805 | 1 | 0.824 | 3.53E-240 | 3 |
| Cdyl | 2.040000e-242 | 34 | 1.38525344380634 | 1 | 0.508 | 4.26E-238 | 3 |
| 4930557A04Rik | 1.010000e-238 | 35 | 1.28922072353822 | 0.998 | 0.47 | 2.12E-234 | 3 |
| Fam71f1 | 1.010000e-231 | 37 | 1.37681426631662 | 1 | 0.671 | 2.11E-227 | 3 |
| Cypt12 | 2.370000e-229 | 39 | 1.39952503951412 | 1 | 0.95 | 4.96E-225 | 3 |
| Spata19 | 2.300000e-228 | 40 | 1.29918032492732 | 1 | 0.917 | 4.81E-224 | 3 |
| Cstl1 | 6.790000e-213 | 43 | 1.26807850295557 | 1 | 0.634 | 1.42E-208 | 3 |
| Tnp2 | 8.760000e-154 | 45 | 1.2958346683325 | 1 | 1 | 1.83E-149 | 3 |
| Prm2 | 1.310000e-255 | 46 | 1.62333016938409 | 1 | 1 | 2.74E-251 | 4 |
| Oaz3 | 3.710000e-253 | 47 | 1.60254526986776 | 1 | 0.985 | 7.78E-249 | 4 |
| Smcp | 1.310000e-250 | 48 | 1.52044710941168 | 1 | 0.989 | 2.74E-246 | 4 |
| Spata3 | 4.720000e-246 | 49 | 1.51076879458028 | 1 | 0.895 | 9.87E-242 | 4 |
| 1700080E11Rik | 2.310000e-243 | 51 | 1.50034395664032 | 0.998 | 0.675 | 4.83E-239 | 4 |
| 1700027A15Rik | 2.890000e-243 | 52 | 1.60780130419964 | 1 | 0.953 | 6.05E-239 | 4 |
| Dnajb8 | 3.020000e-243 | 53 | 1.49258373505588 | 1 | 0.845 | 6.33E-239 | 4 |
| 4933411K16Rik | 3.540000e-243 | 54 | 1.49146241937043 | 1 | 0.953 | 7.41E-239 | 4 |
| Tssk6 | 2.130000e-234 | 55 | 1.48576287479343 | 1 | 0.823 | 4.45E-230 | 4 |
| Tppp2 | 4.130000e-231 | 57 | 1.5326668096524 | 1 | 0.872 | 8.64E-227 | 4 |
| Hemgn | 1.490000e-249 | 61 | 1.50617199076068 | 0.969 | 0.283 | 3.12E-245 | 5 |
| Pex5l | 7.970000e-247 | 62 | 1.54310853937645 | 0.972 | 0.318 | 1.67E-242 | 5 |
| Fam71b | 1.280000e-211 | 64 | 1.41292534771026 | 0.908 | 0.275 | 2.68E-207 | 5 |
| Cypt4 | 8.240000e-210 | 65 | 1.69605465493571 | 1 | 0.898 | 1.72E-205 | 5 |
| Rnf151 | 8.990000e-208 | 66 | 1.5488593215109 | 1 | 0.905 | 1.88E-203 | 5 |
| Banf2 | 1.820000e-204 | 67 | 1.42999651322991 | 0.983 | 0.519 | 3.80E-200 | 5 |
| Tmigd3 | 6.990000e-204 | 68 | 1.46275347159226 | 1 | 0.554 | 1.46E-199 | 5 |
| Cst13 | 1.730000e-198 | 69 | 1.64762653933118 | 0.983 | 0.448 | 3.62E-194 | 5 |
| Scp2d1 | 7.090000e-197 | 71 | 1.5270581871405 | 1 | 0.809 | 1.48E-192 | 5 |
| Gtsf1l | 4.780000e-183 | 72 | 1.41757216289978 | 1 | 0.754 | 1.00E-178 | 5 |
| Rnf166 | 3.670000e-197 | 77 | 1.16202488283659 | 0.967 | 0.384 | 7.69E-193 | 6 |
| Mllt10 | 9.800000e-182 | 78 | 1.55973019392041 | 0.984 | 0.414 | 2.05E-177 | 6 |
| Cdc42ep3 | 8.200000e-175 | 79 | 1.57248722036723 | 0.974 | 0.476 | 1.72E-170 | 6 |
| Actg1 | 2.510000e-164 | 80 | 1.24777158031695 | 1 | 0.875 | 5.26E-160 | 6 |
| Ankrd54 | 3.770000e-160 | 81 | 1.34266237647689 | 0.98 | 0.703 | 7.89E-156 | 6 |
| Ndufaf3 | 2.350000e-156 | 83 | 1.18464364712211 | 0.993 | 0.851 | 4.91E-152 | 6 |
| Ybx3 | 1.330000e-151 | 85 | 1.58054381762891 | 0.98 | 0.801 | 2.77E-147 | 6 |
| Rsph1 | 1.630000e-143 | 86 | 1.19705272583838 | 0.997 | 0.965 | 3.42E-139 | 6 |
| Atxn7l3b | 8.760000e-143 | 87 | 1.27901546017896 | 0.987 | 0.694 | 1.83E-138 | 6 |
| Calm2 | 2.530000e-136 | 89 | 1.39240304856681 | 0.997 | 0.769 | 5.29E-132 | 6 |
| 1700041C23Rik | 8.230000e-174 | 93 | 1.23367035656611 | 1 | 0.406 | 1.72E-169 | 7 |
| Spag6 | 7.170000e-173 | 94 | 1.32933265781535 | 1 | 0.5 | 1.50E-168 | 7 |
| 4930579F01Rik | 8.800000e-170 | 95 | 1.08165275808568 | 1 | 0.484 | 1.84E-165 | 7 |
| Fam24a | 3.820000e-145 | 97 | 1.16638581270323 | 1 | 0.628 | 8.00E-141 | 7 |
| 1700016G14Rik | 2.250000e-142 | 98 | 1.19270921744564 | 1 | 0.567 | 4.72E-138 | 7 |
| BC048502 | 1.840000e-140 | 100 | 1.12707398546114 | 1 | 0.689 | 3.85E-136 | 7 |
| Tekt2 | 1.620000e-139 | 101 | 1.07887064828276 | 1 | 0.742 | 3.39E-135 | 7 |
| 1700011A15Rik | 4.470000e-138 | 102 | 1.15355136597608 | 1 | 0.598 | 9.37E-134 | 7 |
| Tex36 | 1.250000e-136 | 103 | 1.1941039282225 | 1 | 0.578 | 2.62E-132 | 7 |
| 4930558C23Rik | 1.750000e-126 | 104 | 1.14143916077526 | 1 | 0.686 | 3.67E-122 | 7 |
| Gml2 | 5.940000e-307 | 106 | 1.7199758887703 | 0.972 | 0.169 | 1.24E-302 | 8 |
| Gml | 4.330000e-258 | 107 | 2.09819939825548 | 0.968 | 0.229 | 9.06E-254 | 8 |
| Tex101 | 3.700000e-196 | 108 | 2.60270262456605 | 1 | 0.452 | 7.75E-192 | 8 |
| Hmgb2 | 7.630000e-193 | 109 | 1.80568668599268 | 0.996 | 0.347 | 1.60E-188 | 8 |
| Sycp1 | 8.250000e-189 | 110 | 2.38629879528573 | 1 | 0.492 | 1.73E-184 | 8 |
| Cks2 | 2.980000e-188 | 112 | 2.00690437958457 | 0.993 | 0.478 | 6.25E-184 | 8 |
| Mtl5 | 1.320000e-184 | 113 | 1.76856500665749 | 0.996 | 0.52 | 2.77E-180 | 8 |
| Sycp3 | 3.850000e-183 | 114 | 2.25501694680828 | 1 | 0.538 | 8.05E-179 | 8 |
| Ly6k | 4.780000e-178 | 115 | 1.92266644910476 | 1 | 0.576 | 1.00E-173 | 8 |
| Calm2 | 8.390000e-163 | 119 | 1.86214215014649 | 1 | 0.77 | 1.76E-158 | 8 |
| Them6 | 3.280000e-136 | 121 | 1.20798722112286 | 0.992 | 0.529 | 6.87E-132 | 9 |
| Cd320 | 2.450000e-132 | 122 | 1.30047505282078 | 0.996 | 0.648 | 5.14E-128 | 9 |
| Slc2a3 | 6.050000e-128 | 123 | 1.168713853677 | 0.964 | 0.422 | 1.27E-123 | 9 |
| Atxn7l3b | 2.140000e-126 | 124 | 1.35517033772725 | 0.996 | 0.698 | 4.48E-122 | 9 |
| Mesp1 | 3.740000e-126 | 125 | 1.27939580191696 | 1 | 0.753 | 7.83E-122 | 9 |
| Tmem97 | 1.740000e-122 | 128 | 1.1902649475777 | 1 | 0.903 | 3.63E-118 | 9 |
| Phospho2 | 6.250000e-122 | 129 | 1.14042918915952 | 1 | 0.728 | 1.31E-117 | 9 |
| Aurka | 7.470000e-113 | 132 | 1.1392361231797 | 0.968 | 0.587 | 1.56E-108 | 9 |
| Diablo | 4.080000e-112 | 133 | 1.1313995482475 | 1 | 0.757 | 8.55E-108 | 9 |
| Cdc42ep3 | 1.190000e-101 | 135 | 1.2065328172242 | 0.956 | 0.483 | 2.49E-97 | 9 |
| Rpl39 | 0.000000e+00 | 136 | 1.99133882067807 | 0.987 | 0.116 | 0 | 10 |
| Rpl36a | 0.000000e+00 | 137 | 1.98547144656313 | 1 | 0.104 | 0 | 10 |
| Prss50 | 0.000000e+00 | 138 | 1.92913763164341 | 0.917 | 0.052 | 0 | 10 |
| Stra8 | 2.990000e-307 | 139 | 1.90595001168012 | 0.658 | 0.035 | 6.26E-303 | 10 |
| Ncl | 1.640000e-194 | 141 | 1.91360493634007 | 1 | 0.271 | 3.42E-190 | 10 |
| Dazl | 2.410000e-179 | 142 | 1.94942814847224 | 1 | 0.297 | 5.05E-175 | 10 |
| Ptma | 2.610000e-166 | 144 | 2.74635496740208 | 1 | 0.418 | 5.46E-162 | 10 |
| Hmgn2 | 1.150000e-158 | 145 | 1.99662428013208 | 0.982 | 0.401 | 2.41E-154 | 10 |
| Hspa8 | 7.070000e-153 | 147 | 1.89472195878867 | 1 | 0.427 | 1.48E-148 | 10 |
| Rpl22 | 1.410000e-137 | 149 | 1.88453008762894 | 1 | 0.829 | 2.96E-133 | 10 |
| Tex36 | 1.330000e-119 | 151 | 1.43863766050296 | 1 | 0.587 | 2.79E-115 | 11 |
| 1700067P10Rik | 3.550000e-118 | 152 | 1.28987018754412 | 1 | 0.55 | 7.44E-114 | 11 |
| 1700001P01Rik | 1.120000e-117 | 153 | 1.50782862901446 | 1 | 0.506 | 2.34E-113 | 11 |
| 1700007K09Rik | 1.150000e-115 | 155 | 1.34116207969548 | 1 | 0.658 | 2.40E-111 | 11 |
| 1700113H08Rik | 1.340000e-113 | 156 | 1.31419872510916 | 1 | 0.629 | 2.81E-109 | 11 |
| 4930558C23Rik | 4.200000e-113 | 157 | 1.43878196795204 | 1 | 0.693 | 8.80E-109 | 11 |
| 1700015E13Rik | 1.130000e-111 | 158 | 1.42579024040882 | 1 | 0.767 | 2.37E-107 | 11 |
| Tsc22d4 | 1.410000e-110 | 160 | 1.29184751359106 | 1 | 0.611 | 2.96E-106 | 11 |
| Spata45 | 1.850000e-109 | 161 | 1.34239151791611 | 1 | 0.738 | 3.87E-105 | 11 |
| Fam209 | 4.140000e-96 | 165 | 1.33185090865674 | 1 | 0.741 | 8.67E-92 | 11 |
| Ccna1 | 1.360000e-98 | 166 | 1.17556088041405 | 0.994 | 0.576 | 2.84E-94 | 12 |
| Aurka | 5.420000e-96 | 167 | 1.17692635626696 | 1 | 0.592 | 1.13E-91 | 12 |
| AA467197 | 5.410000e-95 | 168 | 1.2119801806585 | 1 | 0.915 | 1.13E-90 | 12 |
| Ccnb1 | 1.620000e-92 | 169 | 1.03092328775679 | 0.983 | 0.572 | 3.39E-88 | 12 |
| Gkap1 | 6.370000e-92 | 170 | 1.07690898199068 | 1 | 0.944 | 1.33E-87 | 12 |
| Pbp2 | 8.780000e-89 | 171 | 1.09391282966024 | 1 | 0.724 | 1.84E-84 | 12 |
| Rasl2-9 | 1.340000e-87 | 172 | 1.12965965798826 | 0.994 | 0.75 | 2.81E-83 | 12 |
| Tbpl1 | 1.820000e-85 | 175 | 1.03507857092134 | 1 | 0.841 | 3.81E-81 | 12 |
| Mesp1 | 9.010000e-79 | 177 | 1.06886891878882 | 1 | 0.757 | 1.89E-74 | 12 |
| Rsph1 | 3.460000e-71 | 179 | 1.03173953666693 | 1 | 0.966 | 7.25E-67 | 12 |
| Zp3r | 3.880000e-113 | 181 | 1.98919142902462 | 0.954 | 0.393 | 8.12E-109 | 13 |
| Acrv1 | 4.770000e-109 | 182 | 2.00949567223545 | 0.983 | 0.49 | 9.99E-105 | 13 |
| Pdilt | 1.730000e-98 | 185 | 1.90313575305773 | 0.919 | 0.397 | 3.62E-94 | 13 |
| Tmem190 | 2.630000e-98 | 186 | 1.7428267344527 | 0.988 | 0.574 | 5.52E-94 | 13 |
| Catsper3 | 1.200000e-95 | 187 | 1.83771201109708 | 0.919 | 0.395 | 2.50E-91 | 13 |
| Spaca1 | 4.610000e-95 | 188 | 1.87009927290028 | 0.988 | 0.555 | 9.65E-91 | 13 |
| Glipr1l1 | 1.760000e-94 | 189 | 1.65666969108193 | 0.954 | 0.561 | 3.69E-90 | 13 |
| Prr27 | 1.210000e-91 | 190 | 2.03432074964664 | 0.879 | 0.377 | 2.54E-87 | 13 |
| Fam24a | 1.160000e-88 | 191 | 1.62703548047176 | 0.988 | 0.638 | 2.42E-84 | 13 |
| Sun5 | 1.810000e-69 | 194 | 1.74553034065098 | 0.85 | 0.441 | 3.79E-65 | 13 |
| Aard | 3.700000e-53 | 196 | 0.504330920182453 | 0.703 | 0.226 | 7.75E-49 | 14 |
| Cst9 | 9.820000e-53 | 197 | 0.559232415755596 | 0.738 | 0.278 | 2.06E-48 | 14 |
| Akap12 | 2.900000e-51 | 198 | 0.929922346564741 | 0.972 | 0.808 | 6.07E-47 | 14 |
| Defb19 | 5.960000e-51 | 199 | 0.697525625918234 | 0.779 | 0.347 | 1.25E-46 | 14 |
| Smcp | 2.400000e-32 | 201 | 0.714503545143446 | 1 | 0.99 | 5.02E-28 | 14 |
| Odf1 | 5.200000e-31 | 202 | 0.592179082641988 | 0.834 | 0.686 | 1.09E-26 | 14 |
| Ube2n | 2.040000e-29 | 203 | 0.475367218669251 | 1 | 0.993 | 4.27E-25 | 14 |
| Smkr-ps | 5.620000e-27 | 204 | 0.565494098855184 | 1 | 0.843 | 1.18E-22 | 14 |
| St6galnac2 | 7.590000e-26 | 205 | 0.545129685258868 | 0.966 | 0.785 | 1.59E-21 | 14 |
| Nupr1l | 1.570000e-22 | 206 | 0.499241118136173 | 1 | 0.926 | 3.30E-18 | 14 |
| Ptgds | 3.280000e-168 | 211 | 2.36767838309578 | 0.712 | 0.064 | 6.86E-164 | 15 |
| Clu | 7.630000e-113 | 213 | 2.98329304768656 | 0.88 | 0.19 | 1.60E-108 | 15 |
| Defb19 | 5.160000e-103 | 214 | 2.94347110231796 | 0.992 | 0.343 | 1.08E-98 | 15 |
| Aard | 1.810000e-102 | 215 | 2.50119915627982 | 0.896 | 0.223 | 3.79E-98 | 15 |
| Gstm1 | 6.520000e-101 | 216 | 2.39193162250051 | 0.752 | 0.135 | 1.37E-96 | 15 |
| Cst12 | 5.360000e-85 | 217 | 2.63954673303257 | 0.832 | 0.234 | 1.12E-80 | 15 |
| Cst9 | 9.370000e-77 | 218 | 2.83830841427248 | 0.84 | 0.277 | 1.96E-72 | 15 |
| Ctsl | 3.470000e-68 | 219 | 2.41622639971844 | 0.784 | 0.231 | 7.27E-64 | 15 |
| mt-Co1 | 1.230000e-42 | 220 | 2.7169991124575 | 0.992 | 0.916 | 2.58E-38 | 15 |
| mt-Nd1 | 7.210000e-42 | 221 | 2.62607504209823 | 0.96 | 0.795 | 1.51E-37 | 15 |
| Rpl36a | 2.030000e-184 | 226 | 2.04467771098891 | 1 | 0.125 | 4.24E-180 | 16 |
| Marcksl1 | 4.440000e-128 | 227 | 2.04189151063094 | 0.983 | 0.212 | 9.29E-124 | 16 |
| Ftl1 | 1.500000e-125 | 228 | 2.46387840428949 | 1 | 0.245 | 3.13E-121 | 16 |
| Hspe1 | 7.230000e-108 | 230 | 2.12895111760891 | 1 | 0.312 | 1.51E-103 | 16 |
| Ptma | 2.930000e-81 | 233 | 2.059371738016 | 1 | 0.432 | 6.13E-77 | 16 |
| Rpl14 | 2.580000e-80 | 234 | 2.17569586893479 | 1 | 0.621 | 5.41E-76 | 16 |
| Rps3 | 2.450000e-78 | 235 | 2.0236430683277 | 1 | 0.678 | 5.13E-74 | 16 |
| Rps11 | 4.090000e-76 | 237 | 1.98222081935452 | 1 | 0.938 | 8.57E-72 | 16 |
| Rps2 | 4.560000e-76 | 238 | 2.03344539677352 | 1 | 0.901 | 9.54E-72 | 16 |
| Rps3a1 | 4.390000e-75 | 239 | 1.97875663422132 | 1 | 0.769 | 9.19E-71 | 16 |
| S100a6 | 0.000000e+00 | 241 | 3.25652651355185 | 1 | 0.012 | 0 | 17 |
| Tpm2 | 1.390000e-222 | 244 | 3.14761106415251 | 1 | 0.028 | 2.90E-218 | 17 |
| Tpm1 | 6.230000e-166 | 245 | 3.12294630318158 | 1 | 0.041 | 1.30E-161 | 17 |
| Myl9 | 2.250000e-116 | 247 | 3.96932711958803 | 1 | 0.064 | 4.71E-112 | 17 |
| Acta2 | 1.900000e-109 | 248 | 4.63908888860816 | 1 | 0.069 | 3.99E-105 | 17 |
| Rps4x | 3.220000e-100 | 249 | 3.06574184072325 | 1 | 0.076 | 6.74E-96 | 17 |
| Igfbp7 | 1.590000e-95 | 250 | 3.33100079562526 | 1 | 0.081 | 3.33E-91 | 17 |
| Rbbp7 | 1.260000e-71 | 251 | 3.04733920380216 | 1 | 0.115 | 2.63E-67 | 17 |
| Mylk | 1.390000e-63 | 252 | 3.18714581946262 | 1 | 0.135 | 2.92E-59 | 17 |
| Gstm1 | 3.630000e-59 | 253 | 3.2925666405583 | 1 | 0.145 | 7.60E-55 | 17 |