Table S1, related to Figure 2 H: Top ten DEGs Mouse sorted Spermatogonia
HERMANN, Brian P., et al. The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids. Cell reports, 2018, 25. Jg., Nr. 6, S. 1650-1667. e8.
Publication: https://doi.org/10.1016/j.celrep.2018.10.026
Description
Disclaimer
The publication The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids by Brian P. Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N. Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D. Lehle, Max Mayo, Birgit Westernströer, Nathan C. Law, Melissa J. Oatley, Ellen K. Velte, Bryan A. Niedenberger, Danielle Fritze, Sherman Silber, Christopher B. Geyer, Jon M. Oatley, John R. McCarrey is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.
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Table
| GENE | PVALUE | No | Avg_logfc | Pct.1 | Pct.2 | P_val_adj | Cluster |
|---|---|---|---|---|---|---|---|
| Tubb5 | 6.400000e-300 | 1 | 0.819354028052407 | 1 | 0.734 | 1.30E-295 | 1 |
| Phgdh | 9.380000e-240 | 2 | 0.557519734909007 | 0.921 | 0.391 | 1.91E-235 | 1 |
| Mmd | 2.930000e-238 | 3 | 0.654441585936076 | 0.988 | 0.558 | 5.97E-234 | 1 |
| Cks2 | 6.090000e-234 | 4 | 0.768830985935507 | 0.99 | 0.63 | 1.24E-229 | 1 |
| Ftl1 | 2.650000e-226 | 5 | 0.529088094101375 | 1 | 0.988 | 5.41E-222 | 1 |
| 2700094K13Rik | 1.420000e-212 | 6 | 0.522382870118201 | 1 | 0.837 | 2.89E-208 | 1 |
| Stmn1 | 1.300000e-201 | 7 | 0.590235589643859 | 0.999 | 0.82 | 2.64E-197 | 1 |
| Ccnd2 | 5.060000e-155 | 8 | 0.596678182874658 | 0.953 | 0.546 | 1.03E-150 | 1 |
| Cenpa | 2.750000e-146 | 9 | 0.537957849613557 | 0.981 | 0.648 | 5.62E-142 | 1 |
| Cenpf | 2.350000e-135 | 10 | 0.513766310637805 | 0.993 | 0.71 | 4.80E-131 | 1 |
| Rpl22l1 | 0.000000e+00 | 11 | 1.04280877907483 | 1 | 0.971 | 0 | 2 |
| Tcl1 | 0.000000e+00 | 12 | 0.933039163955621 | 0.816 | 0.167 | 0 | 2 |
| Ppfibp2 | 0.000000e+00 | 13 | 0.772404791147515 | 0.76 | 0.179 | 0 | 2 |
| Fst | 0.000000e+00 | 14 | 0.752579986545144 | 0.711 | 0.173 | 0 | 2 |
| Id4 | 5.650000e-295 | 15 | 0.810574607497474 | 0.765 | 0.228 | 1.15E-290 | 2 |
| Nefm | 1.930000e-293 | 16 | 0.754012945406923 | 0.591 | 0.112 | 3.93E-289 | 2 |
| Rest | 3.550000e-290 | 17 | 0.895085980502545 | 0.976 | 0.625 | 7.25E-286 | 2 |
| Rasgrp2 | 1.190000e-272 | 18 | 0.931047372305309 | 0.96 | 0.62 | 2.42E-268 | 2 |
| Chd4 | 1.040000e-244 | 19 | 0.807576956515163 | 0.995 | 0.821 | 2.13E-240 | 2 |
| Ccnd2 | 6.160000e-208 | 20 | 0.793592397752007 | 0.976 | 0.553 | 1.26E-203 | 2 |
| Egr4 | 0.000000e+00 | 21 | 0.972433891564959 | 0.953 | 0.357 | 0 | 3 |
| Upp1 | 1.230000e-275 | 22 | 0.615545802128417 | 0.671 | 0.163 | 2.51E-271 | 3 |
| Sdc4 | 1.140000e-244 | 23 | 0.826819456769497 | 0.998 | 0.523 | 2.33E-240 | 3 |
| D10Wsu102e | 2.010000e-221 | 24 | 0.677362721080967 | 0.97 | 0.603 | 4.10E-217 | 3 |
| Map1lc3b | 2.400000e-218 | 25 | 0.625528138517141 | 1 | 0.922 | 4.90E-214 | 3 |
| Sohlh1 | 3.840000e-217 | 26 | 0.640410380867303 | 0.952 | 0.554 | 7.84E-213 | 3 |
| Foxf1 | 1.840000e-210 | 27 | 0.616510187236397 | 0.82 | 0.315 | 3.74E-206 | 3 |
| Uchl1 | 2.840000e-200 | 28 | 0.632078778940331 | 1 | 0.765 | 5.80E-196 | 3 |
| Psmb10 | 9.740000e-193 | 29 | 0.60734949997201 | 0.936 | 0.564 | 1.99E-188 | 3 |
| Eno1 | 3.910000e-181 | 30 | 0.622844224871264 | 0.968 | 0.653 | 7.98E-177 | 3 |
| Acta2 | 0.000000e+00 | 31 | 3.74008877267858 | 1 | 0.364 | 0 | 4 |
| Myl9 | 0.000000e+00 | 32 | 3.46125099209215 | 1 | 0.337 | 0 | 4 |
| Tpm2 | 0.000000e+00 | 33 | 2.94126207596559 | 0.997 | 0.196 | 0 | 4 |
| S100a6 | 0.000000e+00 | 34 | 2.93482577739544 | 0.999 | 0.274 | 0 | 4 |
| Gstm1 | 0.000000e+00 | 35 | 2.88991838166557 | 1 | 0.408 | 0 | 4 |
| Mylk | 0.000000e+00 | 36 | 2.82261185828095 | 0.999 | 0.289 | 0 | 4 |
| Csrp1 | 0.000000e+00 | 37 | 2.76940373286689 | 1 | 0.348 | 0 | 4 |
| Tpm1 | 0.000000e+00 | 38 | 2.75965480148202 | 1 | 0.535 | 0 | 4 |
| Cald1 | 0.000000e+00 | 39 | 2.72554821174564 | 0.997 | 0.139 | 0 | 4 |
| Tnnt2 | 0.000000e+00 | 40 | 2.71701936273829 | 0.993 | 0.092 | 0 | 4 |
| Esx1 | 0.000000e+00 | 41 | 1.12914513422988 | 0.997 | 0.345 | 0 | 5 |
| Eif5 | 4.110000e-232 | 42 | 0.773384274038554 | 1 | 0.91 | 8.39E-228 | 5 |
| Hmgn2 | 8.480000e-231 | 43 | 0.843154775849727 | 1 | 0.897 | 1.73E-226 | 5 |
| Rhox13 | 1.510000e-227 | 44 | 0.792532319745674 | 0.995 | 0.436 | 3.08E-223 | 5 |
| Dek | 2.340000e-213 | 45 | 0.717813569547064 | 1 | 0.873 | 4.77E-209 | 5 |
| Atp5f1 | 3.070000e-207 | 46 | 0.798245331609786 | 1 | 0.874 | 6.26E-203 | 5 |
| Smc4 | 3.370000e-205 | 47 | 0.888206206793678 | 0.998 | 0.664 | 6.88E-201 | 5 |
| Hmgb2 | 3.100000e-201 | 48 | 0.817900603023758 | 1 | 0.912 | 6.33E-197 | 5 |
| H3f3b | 2.510000e-195 | 49 | 0.780288426279666 | 1 | 0.998 | 5.13E-191 | 5 |
| Hist1h2ap | 6.190000e-118 | 50 | 1.02285102745368 | 0.988 | 0.693 | 1.26E-113 | 5 |
| Stra8 | 0.000000e+00 | 51 | 1.98740104144417 | 0.996 | 0.499 | 0 | 6 |
| Prss50 | 0.000000e+00 | 52 | 1.66425707230181 | 1 | 0.322 | 0 | 6 |
| Ly6k | 0.000000e+00 | 53 | 1.62768859256213 | 0.986 | 0.279 | 0 | 6 |
| M1ap | 0.000000e+00 | 54 | 1.47045864482369 | 0.957 | 0.383 | 0 | 6 |
| Ccne2 | 0.000000e+00 | 55 | 1.37674745132881 | 0.967 | 0.343 | 0 | 6 |
| Sycp3 | 1.280000e-290 | 56 | 1.52515258800104 | 0.992 | 0.693 | 2.61E-286 | 6 |
| Smc1b | 1.240000e-273 | 57 | 1.35800800982277 | 0.998 | 0.732 | 2.53E-269 | 6 |
| Pigp | 2.210000e-267 | 58 | 1.30114866397883 | 0.98 | 0.575 | 4.52E-263 | 6 |
| Tex101 | 5.540000e-266 | 59 | 1.51646457762073 | 0.998 | 0.725 | 1.13E-261 | 6 |
| H1fx | 6.960000e-266 | 60 | 1.58590664434086 | 0.996 | 0.647 | 1.42E-261 | 6 |
| Esx1 | 1.070000e-210 | 61 | 1.13204955558247 | 0.947 | 0.362 | 2.17E-206 | 7 |
| Hmgb2 | 1.880000e-165 | 62 | 0.909262170652005 | 1 | 0.914 | 3.83E-161 | 7 |
| Smc4 | 2.050000e-150 | 63 | 0.922902522451785 | 0.964 | 0.674 | 4.17E-146 | 7 |
| Hmgn2 | 6.800000e-149 | 64 | 0.796188285173483 | 0.996 | 0.9 | 1.39E-144 | 7 |
| Usp26 | 1.230000e-124 | 65 | 0.776416784498663 | 0.959 | 0.711 | 2.51E-120 | 7 |
| Nusap1 | 5.570000e-114 | 66 | 0.860155219635616 | 0.724 | 0.344 | 1.14E-109 | 7 |
| Top2a | 3.530000e-92 | 67 | 0.783990055403738 | 0.88 | 0.585 | 7.21E-88 | 7 |
| Arl6ip1 | 2.250000e-87 | 68 | 0.811518548750632 | 0.915 | 0.826 | 4.58E-83 | 7 |
| Cdc20 | 2.630000e-70 | 69 | 0.766147769320875 | 0.724 | 0.48 | 5.36E-66 | 7 |
| Ube2c | 3.970000e-59 | 70 | 0.814501083803516 | 0.697 | 0.479 | 8.10E-55 | 7 |
| mt-Co1 | 1.860000e-182 | 71 | 1.09812973496646 | 1 | 1 | 3.79E-178 | 8 |
| mt-Atp6 | 1.860000e-182 | 72 | 1.05833017517848 | 1 | 1 | 3.79E-178 | 8 |
| mt-Co3 | 6.960000e-181 | 73 | 1.09427872418298 | 1 | 1 | 1.42E-176 | 8 |
| mt-Nd1 | 1.280000e-180 | 74 | 1.18371083044933 | 1 | 1 | 2.60E-176 | 8 |
| mt-Co2 | 2.570000e-164 | 75 | 1.02297679666186 | 1 | 1 | 5.24E-160 | 8 |
| mt-Cytb | 1.140000e-148 | 76 | 0.997989597781678 | 1 | 1 | 2.32E-144 | 8 |
| mt-Nd4 | 3.580000e-147 | 77 | 0.996743836469026 | 0.998 | 0.999 | 7.30E-143 | 8 |
| mt-Nd2 | 2.800000e-138 | 78 | 1.05605179886875 | 0.996 | 0.992 | 5.72E-134 | 8 |
| mt-Nd3 | 1.450000e-122 | 79 | 0.892142674434417 | 0.987 | 0.955 | 2.96E-118 | 8 |
| Lars2 | 1.350000e-55 | 80 | 0.824872827664875 | 0.407 | 0.167 | 2.75E-51 | 8 |
| Cldn5 | 0.000000e+00 | 81 | 3.91008950102538 | 1 | 0.175 | 0 | 9 |
| Ly6c1 | 0.000000e+00 | 82 | 3.034938030189 | 1 | 0.093 | 0 | 9 |
| Ptn | 0.000000e+00 | 83 | 2.82141806221259 | 0.95 | 0.058 | 0 | 9 |
| Ifitm3 | 0.000000e+00 | 84 | 2.74737545140759 | 1 | 0.287 | 0 | 9 |
| Sepp1 | 0.000000e+00 | 85 | 2.68103938534413 | 0.993 | 0.278 | 0 | 9 |
| Ly6e | 0.000000e+00 | 86 | 2.53917772876676 | 0.998 | 0.217 | 0 | 9 |
| Clu | 0.000000e+00 | 87 | 2.52208985859238 | 0.976 | 0.089 | 0 | 9 |
| Sparc | 0.000000e+00 | 88 | 2.4808302953832 | 1 | 0.315 | 0 | 9 |
| Igfbp7 | 1.080000e-285 | 89 | 2.61494059415091 | 0.998 | 0.409 | 2.20E-281 | 9 |
| Tmsb4x | 5.980000e-282 | 90 | 2.73122118660677 | 1 | 0.507 | 1.22E-277 | 9 |
| Prss50 | 3.480000e-179 | 91 | 1.11015945182358 | 1 | 0.339 | 7.10E-175 | 10 |
| Ly6k | 3.850000e-168 | 92 | 0.8222593123691 | 0.968 | 0.299 | 7.85E-164 | 10 |
| 1700013H16Rik | 1.280000e-166 | 93 | 0.951367565049385 | 0.976 | 0.353 | 2.61E-162 | 10 |
| Esx1 | 3.490000e-152 | 94 | 0.977562707071509 | 0.979 | 0.372 | 7.12E-148 | 10 |
| Atp5f1 | 1.510000e-142 | 95 | 0.923452583241529 | 1 | 0.879 | 3.08E-138 | 10 |
| Tex101 | 3.810000e-141 | 96 | 1.05254426663676 | 1 | 0.732 | 7.77E-137 | 10 |
| Rhox13 | 2.910000e-133 | 97 | 0.848618715569101 | 0.979 | 0.459 | 5.95E-129 | 10 |
| Gm364 | 8.490000e-128 | 98 | 0.761430817224735 | 0.914 | 0.37 | 1.73E-123 | 10 |
| Ssr2 | 1.650000e-126 | 99 | 0.839500034944394 | 1 | 0.707 | 3.37E-122 | 10 |
| Sycp1 | 2.640000e-117 | 100 | 0.784587029322943 | 1 | 0.758 | 5.39E-113 | 10 |
| Gm13075 | 4.990000e-156 | 101 | 1.26221015361431 | 0.76 | 0.17 | 1.02E-151 | 11 |
| Crabp1 | 3.020000e-142 | 102 | 0.949897559834126 | 0.97 | 0.557 | 6.17E-138 | 11 |
| Gm7120 | 2.570000e-125 | 103 | 1.69392429347644 | 0.773 | 0.216 | 5.25E-121 | 11 |
| Stra8 | 6.200000e-109 | 104 | 0.946191467446809 | 0.977 | 0.515 | 1.26E-104 | 11 |
| P3h3 | 1.220000e-104 | 105 | 1.26991071750137 | 0.793 | 0.261 | 2.50E-100 | 11 |
| Loxl2 | 1.220000e-98 | 106 | 1.0213544519713 | 0.852 | 0.303 | 2.49E-94 | 11 |
| Ptcra | 2.180000e-97 | 107 | 1.22393781711981 | 0.632 | 0.171 | 4.44E-93 | 11 |
| Il11 | 7.670000e-73 | 108 | 1.2727775941027 | 0.819 | 0.421 | 1.56E-68 | 11 |
| Tmem245 | 4.700000e-66 | 109 | 1.04380594899272 | 0.891 | 0.534 | 9.60E-62 | 11 |
| RP23-4H17.3 | 2.520000e-42 | 110 | 0.912379103330319 | 0.497 | 0.18 | 5.14E-38 | 11 |
| Igf1 | 4.200000e-274 | 111 | 2.31137345016031 | 0.85 | 0.076 | 8.57E-270 | 12 |
| Adamts5 | 9.480000e-251 | 112 | 2.31190643430597 | 0.9 | 0.099 | 1.93E-246 | 12 |
| Serping1 | 3.920000e-201 | 113 | 2.35712304985527 | 0.962 | 0.158 | 8.00E-197 | 12 |
| Dcn | 6.770000e-195 | 114 | 3.62592762886596 | 0.969 | 0.177 | 1.38E-190 | 12 |
| Mgp | 1.830000e-187 | 115 | 2.66542118068649 | 0.944 | 0.165 | 3.74E-183 | 12 |
| Gsn | 4.970000e-187 | 116 | 3.50412028648251 | 0.962 | 0.186 | 1.01E-182 | 12 |
| Apoe | 1.040000e-121 | 117 | 3.1052971378373 | 0.994 | 0.396 | 2.12E-117 | 12 |
| Pgrmc1 | 1.160000e-107 | 118 | 2.25946694623998 | 1 | 0.543 | 2.36E-103 | 12 |
| Id3 | 1.160000e-106 | 119 | 2.30727817138156 | 0.925 | 0.308 | 2.38E-102 | 12 |
| Fos | 2.140000e-73 | 120 | 2.22853078293427 | 0.925 | 0.595 | 4.37E-69 | 12 |
| Rpl41 | 1.710000e-37 | 121 | 0.449838316775001 | 1 | 1 | 3.49E-33 | 13 |
| Meioc | 2.640000e-37 | 122 | 0.444967715244676 | 0.903 | 0.3 | 5.38E-33 | 13 |
| Gm10076 | 4.520000e-31 | 123 | 0.486148654821388 | 1 | 0.988 | 9.22E-27 | 13 |
| Esx1 | 5.830000e-26 | 124 | 0.432759566957878 | 0.929 | 0.393 | 1.19E-21 | 13 |
| RP23-4H17.3 | 8.150000e-23 | 125 | 0.501924431753574 | 0.558 | 0.188 | 1.66E-18 | 13 |
| Rps28 | 3.180000e-22 | 126 | 0.439063644418741 | 1 | 1 | 6.48E-18 | 13 |
| Smc4 | 3.360000e-22 | 127 | 0.50305773564145 | 0.973 | 0.689 | 6.86E-18 | 13 |
| Gkap1 | 6.960000e-22 | 128 | 0.423406538244636 | 0.956 | 0.759 | 1.42E-17 | 13 |
| Atp5f1 | 3.480000e-19 | 129 | 0.430372107764146 | 1 | 0.883 | 7.10E-15 | 13 |
| Sycp1 | 2.330000e-18 | 130 | 0.460957382351847 | 0.947 | 0.767 | 4.76E-14 | 13 |
| C1qc | 0.000000e+00 | 131 | 3.24966248231377 | 0.982 | 0.023 | 0 | 14 |
| Tyrobp | 0.000000e+00 | 132 | 2.9287162876063 | 0.982 | 0.029 | 0 | 14 |
| C1qa | 1.870000e-272 | 133 | 3.62785257388262 | 0.982 | 0.037 | 3.82E-268 | 14 |
| C1qb | 1.020000e-257 | 134 | 3.4982228419283 | 0.964 | 0.038 | 2.09E-253 | 14 |
| Lyz2 | 7.850000e-257 | 135 | 3.6566970396006 | 0.964 | 0.038 | 1.60E-252 | 14 |
| H2-Aa | 8.660000e-133 | 136 | 4.03750942884132 | 0.927 | 0.077 | 1.77E-128 | 14 |
| H2-Eb1 | 1.520000e-114 | 137 | 3.97414941165635 | 0.927 | 0.092 | 3.10E-110 | 14 |
| Ccl4 | 6.530000e-113 | 138 | 3.33611363570217 | 0.636 | 0.038 | 1.33E-108 | 14 |
| H2-Ab1 | 9.270000e-80 | 139 | 3.915710420844 | 0.945 | 0.15 | 1.89E-75 | 14 |
| Cd74 | 5.000000e-66 | 140 | 5.12186132652431 | 0.945 | 0.192 | 1.02E-61 | 14 |
| Rgs5 | 0.000000e+00 | 141 | 2.49319741813178 | 0.9 | 0.008 | 0 | 15 |
| Sncg | 0.000000e+00 | 142 | 2.2083405224086 | 0.725 | 0.008 | 0 | 15 |
| Mustn1 | 7.060000e-150 | 143 | 3.05451407064511 | 0.925 | 0.047 | 1.44E-145 | 15 |
| Des | 9.090000e-60 | 144 | 2.21315339381575 | 1 | 0.16 | 1.85E-55 | 15 |
| Tagln | 7.350000e-56 | 145 | 3.02949665003505 | 0.975 | 0.175 | 1.50E-51 | 15 |
| Myh11 | 6.260000e-47 | 146 | 2.29794172627219 | 0.95 | 0.179 | 1.28E-42 | 15 |
| Crip1 | 3.670000e-36 | 147 | 3.4743166998051 | 1 | 0.365 | 7.50E-32 | 15 |
| Myl9 | 1.850000e-30 | 148 | 2.26969239972231 | 1 | 0.402 | 3.78E-26 | 15 |
| Mylk | 2.030000e-30 | 149 | 2.2952324743004 | 0.975 | 0.359 | 4.15E-26 | 15 |
| Acta2 | 2.770000e-26 | 150 | 2.2521425246702 | 0.975 | 0.427 | 5.64E-22 | 15 |
| Hmgb4 | 1.360000e-193 | 151 | 3.60177965405353 | 1 | 0.015 | 2.78E-189 | 16 |
| Prm3 | 2.770000e-149 | 152 | 3.5720371675248 | 1 | 0.02 | 5.65E-145 | 16 |
| Smcp | 3.180000e-87 | 153 | 3.88990566762292 | 1 | 0.038 | 6.49E-83 | 16 |
| Fabp9 | 2.680000e-49 | 154 | 3.84026135438574 | 1 | 0.072 | 5.47E-45 | 16 |
| Meig1 | 2.100000e-37 | 155 | 3.70788990441264 | 1 | 0.1 | 4.29E-33 | 16 |
| Tnp2 | 5.770000e-28 | 156 | 5.25557319401869 | 0.867 | 0.099 | 1.18E-23 | 16 |
| Dbil5 | 2.880000e-21 | 157 | 3.68033502105311 | 1 | 0.205 | 5.87E-17 | 16 |
| Prm2 | 1.320000e-16 | 158 | 5.76278140435854 | 0.933 | 0.212 | 2.69E-12 | 16 |
| Tnp1 | 6.490000e-15 | 159 | 5.31586631110125 | 0.933 | 0.243 | 1.32E-10 | 16 |
| Prm1 | 8.190000e-14 | 160 | 6.41491886836722 | 0.933 | 0.283 | 1.67E-09 | 16 |