Table S1, related to Figure 6 D: P6 top ten DEGs Mouse sorted spermatogonia
HERMANN, Brian P., et al. The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids. Cell reports, 2018, 25. Jg., Nr. 6, S. 1650-1667. e8.
Publication: https://doi.org/10.1016/j.celrep.2018.10.026
Description
P6 = postnatal day 6
Disclaimer
The publication The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids by Brian P. Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N. Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D. Lehle, Max Mayo, Birgit Westernströer, Nathan C. Law, Melissa J. Oatley, Ellen K. Velte, Bryan A. Niedenberger, Danielle Fritze, Sherman Silber, Christopher B. Geyer, Jon M. Oatley, John R. McCarrey is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.
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Table
| GENE | PVALUE | Avg_logfc | Pct.1 | Pct.2 | P_val_adj | Cluster |
|---|---|---|---|---|---|---|
| Rasgrp2 | 0.000000e+00 | 0.621259934083547 | 0.855 | 0.465 | 0 | 1 |
| Prdx1 | 0.000000e+00 | 0.475887223581471 | 1 | 0.989 | 0 | 1 |
| Tcl1 | 0.000000e+00 | 0.472893963222478 | 0.656 | 0.22 | 0 | 1 |
| Hhex | 0.000000e+00 | 0.465665592987235 | 0.804 | 0.417 | 0 | 1 |
| Id4 | 0.000000e+00 | 0.443890041847274 | 0.647 | 0.254 | 0 | 1 |
| Ret | 0.000000e+00 | 0.43136138317739 | 0.688 | 0.258 | 0 | 1 |
| Mt1 | 4.450000e-274 | 0.510390025473309 | 0.999 | 0.822 | 8.95E-270 | 1 |
| Rpl22l1 | 1.300000e-254 | 0.47954881409452 | 1 | 0.986 | 2.62E-250 | 1 |
| Mt2 | 3.900000e-218 | 0.465394587046852 | 1 | 0.728 | 7.85E-214 | 1 |
| Hist1h2ap | 3.610000e-92 | 0.451259571931588 | 0.648 | 0.457 | 7.27E-88 | 1 |
| Crabp1 | 0.000000e+00 | 0.982070078260092 | 0.98 | 0.509 | 0 | 2 |
| Gfer | 0.000000e+00 | 0.690232772874061 | 0.939 | 0.655 | 0 | 2 |
| Dynll2 | 0.000000e+00 | 0.680126151551831 | 0.999 | 0.874 | 0 | 2 |
| Lmo1 | 0.000000e+00 | 0.678750125005383 | 0.782 | 0.24 | 0 | 2 |
| Ppp1r14b | 0.000000e+00 | 0.657557073399436 | 0.973 | 0.711 | 0 | 2 |
| Uchl1 | 0.000000e+00 | 0.622869800460567 | 0.991 | 0.758 | 0 | 2 |
| Igfbp2 | 0.000000e+00 | 0.597823741401952 | 0.9 | 0.49 | 0 | 2 |
| Dazl | 0.000000e+00 | 0.596577382122246 | 0.999 | 0.731 | 0 | 2 |
| Nt5dc2 | 9.570000e-287 | 0.601714247456534 | 0.854 | 0.501 | 1.92E-282 | 2 |
| Stra8 | 1.080000e-264 | 0.784878100313621 | 0.793 | 0.367 | 2.17E-260 | 2 |
| Aard | 0.000000e+00 | 2.82353744075223 | 1 | 0.174 | 0 | 3 |
| Rhox8 | 0.000000e+00 | 2.69830101786462 | 0.994 | 0.097 | 0 | 3 |
| Cst12 | 0.000000e+00 | 2.559851361711 | 1 | 0.087 | 0 | 3 |
| Clu | 0.000000e+00 | 2.549367079795 | 0.999 | 0.095 | 0 | 3 |
| Inha | 0.000000e+00 | 2.4102730599638 | 0.996 | 0.085 | 0 | 3 |
| Gstm2 | 0.000000e+00 | 2.40424524243717 | 0.998 | 0.141 | 0 | 3 |
| Cst9 | 0.000000e+00 | 2.37111121849235 | 0.987 | 0.082 | 0 | 3 |
| Gstm1 | 0.000000e+00 | 2.36083164912747 | 0.999 | 0.336 | 0 | 3 |
| Kctd14 | 0.000000e+00 | 2.35957234373286 | 0.996 | 0.089 | 0 | 3 |
| Defb19 | 0.000000e+00 | 2.26210732863438 | 0.997 | 0.094 | 0 | 3 |
| Rps28 | 3.230000e-182 | 0.333382258570595 | 1 | 1 | 6.50E-178 | 4 |
| Mpc2 | 1.430000e-174 | 0.404610349484615 | 0.997 | 0.908 | 2.87E-170 | 4 |
| Usp26 | 2.040000e-152 | 0.40011861636865 | 0.962 | 0.69 | 4.10E-148 | 4 |
| Egr4 | 6.690000e-150 | 0.358767527121075 | 0.926 | 0.538 | 1.34E-145 | 4 |
| Bola2 | 4.360000e-147 | 0.341703988233711 | 0.996 | 0.891 | 8.76E-143 | 4 |
| Pdcd11 | 5.030000e-147 | 0.323384126637916 | 0.974 | 0.698 | 1.01E-142 | 4 |
| Mt1 | 4.730000e-130 | 0.428285930488125 | 0.983 | 0.839 | 9.51E-126 | 4 |
| Sys1 | 1.480000e-119 | 0.317445638108211 | 0.991 | 0.837 | 2.97E-115 | 4 |
| Rpl39l | 4.340000e-114 | 0.326043872270883 | 0.965 | 0.723 | 8.72E-110 | 4 |
| Mt2 | 4.660000e-97 | 0.381275015429608 | 0.968 | 0.754 | 9.36E-93 | 4 |
| Egr4 | 0.000000e+00 | 0.828464668033187 | 0.97 | 0.533 | 0 | 5 |
| Map1lc3b | 0.000000e+00 | 0.614879582467055 | 1 | 0.947 | 0 | 5 |
| Foxf1 | 0.000000e+00 | 0.554178612208542 | 0.703 | 0.212 | 0 | 5 |
| Rragd | 0.000000e+00 | 0.538385662191163 | 0.842 | 0.348 | 0 | 5 |
| Nanos3 | 0.000000e+00 | 0.508563234748963 | 0.77 | 0.303 | 0 | 5 |
| Sohlh1 | 9.190000e-281 | 0.560200726494681 | 0.968 | 0.596 | 1.85E-276 | 5 |
| Sdc4 | 1.310000e-255 | 0.56520575681446 | 0.991 | 0.682 | 2.62E-251 | 5 |
| D10Wsu102e | 1.950000e-245 | 0.532976326673509 | 0.96 | 0.688 | 3.92E-241 | 5 |
| Psmd7 | 4.710000e-242 | 0.504523286789369 | 0.983 | 0.817 | 9.47E-238 | 5 |
| Pmm1 | 7.810000e-240 | 0.505452198067318 | 0.934 | 0.644 | 1.57E-235 | 5 |
| Stra8 | 0.000000e+00 | 1.07804209541896 | 0.876 | 0.365 | 0 | 6 |
| Crabp1 | 0.000000e+00 | 0.839314498827441 | 0.984 | 0.517 | 0 | 6 |
| Dynll2 | 0.000000e+00 | 0.635699594631121 | 1 | 0.876 | 0 | 6 |
| Ppp1r14b | 0.000000e+00 | 0.612088972916865 | 0.987 | 0.714 | 0 | 6 |
| Lmo1 | 0.000000e+00 | 0.598674400871743 | 0.828 | 0.245 | 0 | 6 |
| Gfer | 4.850000e-270 | 0.589030078023882 | 0.972 | 0.657 | 9.76E-266 | 6 |
| Il11 | 4.350000e-168 | 0.563968917810942 | 0.855 | 0.469 | 8.74E-164 | 6 |
| Loxl2 | 7.900000e-124 | 0.536210584615664 | 0.854 | 0.496 | 1.59E-119 | 6 |
| Gm7120 | 2.740000e-110 | 0.567032757036925 | 0.664 | 0.342 | 5.52E-106 | 6 |
| Haus8 | 3.290000e-92 | 0.541522617081698 | 0.831 | 0.516 | 6.61E-88 | 6 |
| Nefm | 0.000000e+00 | 0.632932241073872 | 0.759 | 0.202 | 0 | 7 |
| Id4 | 0.000000e+00 | 0.539905651041389 | 0.837 | 0.272 | 0 | 7 |
| Tcl1 | 0.000000e+00 | 0.518929665111186 | 0.819 | 0.245 | 0 | 7 |
| Usp26 | 3.210000e-298 | 0.638578048856464 | 0.998 | 0.69 | 6.46E-294 | 7 |
| Rasgrp2 | 3.780000e-262 | 0.576558439792649 | 0.933 | 0.494 | 7.59E-258 | 7 |
| Top2a | 4.550000e-224 | 0.523054786725886 | 0.984 | 0.654 | 9.15E-220 | 7 |
| Mt1 | 4.980000e-199 | 0.568499325500534 | 0.999 | 0.839 | 1.00E-194 | 7 |
| Mmd | 2.290000e-193 | 0.498340052090373 | 0.999 | 0.775 | 4.61E-189 | 7 |
| Mt2 | 1.480000e-190 | 0.564797520489758 | 0.999 | 0.754 | 2.99E-186 | 7 |
| Cenpa | 1.750000e-182 | 0.523893856087235 | 0.994 | 0.747 | 3.51E-178 | 7 |
| Rpgrip1 | 5.680000e-265 | 1.2594853061379 | 0.753 | 0.391 | 1.14E-260 | 8 |
| Cbx3 | 3.280000e-225 | 0.968758456711046 | 0.901 | 0.87 | 6.60E-221 | 8 |
| Actb | 2.060000e-207 | 1.00513916379225 | 0.975 | 0.997 | 4.13E-203 | 8 |
| Supt16 | 1.090000e-185 | 0.914768872741606 | 0.772 | 0.59 | 2.20E-181 | 8 |
| Hsf2 | 8.500000e-142 | 0.66429847432922 | 0.497 | 0.214 | 1.71E-137 | 8 |
| Insig1 | 1.470000e-86 | 0.658586103537227 | 0.642 | 0.515 | 2.96E-82 | 8 |
| Pdcd4 | 1.930000e-83 | 0.590687283101694 | 0.723 | 0.681 | 3.88E-79 | 8 |
| mt-Nd1 | 6.380000e-79 | 0.562358351728902 | 1 | 1 | 1.28E-74 | 8 |
| Pim1 | 3.710000e-73 | 0.672533497038315 | 0.703 | 0.623 | 7.46E-69 | 8 |
| Sdc4 | 1.070000e-65 | 0.587522061761519 | 0.79 | 0.709 | 2.15E-61 | 8 |
| Meg3 | 0.000000e+00 | 3.98744807322318 | 0.993 | 0.297 | 0 | 9 |
| Dlk1 | 0.000000e+00 | 3.3684078533584 | 0.953 | 0.456 | 0 | 9 |
| Dcn | 0.000000e+00 | 3.09074791017798 | 0.978 | 0.044 | 0 | 9 |
| Col3a1 | 0.000000e+00 | 2.91223574524207 | 0.997 | 0.058 | 0 | 9 |
| Col1a2 | 0.000000e+00 | 2.66812917758181 | 0.995 | 0.064 | 0 | 9 |
| Col1a1 | 0.000000e+00 | 2.57000837134582 | 0.948 | 0.184 | 0 | 9 |
| Ebf1 | 0.000000e+00 | 2.49930577204177 | 0.946 | 0.059 | 0 | 9 |
| Htra3 | 0.000000e+00 | 2.24767715911956 | 0.948 | 0.052 | 0 | 9 |
| Tshz2 | 0.000000e+00 | 2.22812041917049 | 0.988 | 0.127 | 0 | 9 |
| Igfbp7 | 0.000000e+00 | 2.19613437920419 | 0.997 | 0.074 | 0 | 9 |
| Acta2 | 0.000000e+00 | 4.0906166309183 | 1 | 0.05 | 0 | 10 |
| Myl9 | 0.000000e+00 | 3.01335703480267 | 1 | 0.166 | 0 | 10 |
| Mgp | 0.000000e+00 | 2.79029718409214 | 0.995 | 0.041 | 0 | 10 |
| Tagln | 0.000000e+00 | 2.55196404867269 | 0.922 | 0.023 | 0 | 10 |
| Bgn | 0.000000e+00 | 2.5083999396233 | 0.996 | 0.061 | 0 | 10 |
| Igfbp7 | 0.000000e+00 | 2.40033490432305 | 1 | 0.076 | 0 | 10 |
| S100a10 | 0.000000e+00 | 2.32373886108862 | 1 | 0.244 | 0 | 10 |
| Mylk | 0.000000e+00 | 2.29856001261655 | 0.961 | 0.22 | 0 | 10 |
| Col4a4 | 0.000000e+00 | 2.23044997781979 | 0.982 | 0.043 | 0 | 10 |
| Cnn2 | 0.000000e+00 | 2.21148362893828 | 0.989 | 0.18 | 0 | 10 |
| Aard | 0.000000e+00 | 1.7915325509565 | 1 | 0.236 | 0 | 11 |
| Defb19 | 0.000000e+00 | 1.77948817974748 | 1 | 0.162 | 0 | 11 |
| Cst9 | 0.000000e+00 | 1.74205268593782 | 0.996 | 0.15 | 0 | 11 |
| Cst12 | 0.000000e+00 | 1.72000188746262 | 1 | 0.156 | 0 | 11 |
| Clu | 0.000000e+00 | 1.69935894620955 | 0.998 | 0.164 | 0 | 11 |
| Gstm6 | 0.000000e+00 | 1.68094529489402 | 0.998 | 0.199 | 0 | 11 |
| Gstm2 | 0.000000e+00 | 1.65419177168697 | 0.996 | 0.206 | 0 | 11 |
| Kctd14 | 0.000000e+00 | 1.64464927624262 | 0.996 | 0.157 | 0 | 11 |
| Gstm1 | 5.370000e-298 | 1.78112762905932 | 1 | 0.386 | 1.08E-293 | 11 |
| Tuba1b | 1.900000e-269 | 1.61363662598774 | 1 | 0.828 | 3.83E-265 | 11 |
| Pf4 | 0.000000e+00 | 3.54918723715671 | 0.42 | 0.003 | 0 | 12 |
| Tyrobp | 0.000000e+00 | 3.32423204806392 | 0.68 | 0.006 | 0 | 12 |
| C1qb | 0.000000e+00 | 2.88907324659619 | 0.42 | 0.001 | 0 | 12 |
| C1qc | 0.000000e+00 | 2.8280544010074 | 0.42 | 0.001 | 0 | 12 |
| C1qa | 0.000000e+00 | 2.82585504476143 | 0.44 | 0.002 | 0 | 12 |
| Lyz2 | 5.700000e-294 | 3.3418078311785 | 0.42 | 0.005 | 1.15E-289 | 12 |
| Cd52 | 8.280000e-208 | 2.95645280756479 | 0.58 | 0.015 | 1.67E-203 | 12 |
| Fcer1g | 3.980000e-61 | 3.20498286390156 | 0.68 | 0.083 | 8.00E-57 | 12 |
| Tmsb4x | 2.380000e-50 | 3.91918809603434 | 1 | 0.306 | 4.79E-46 | 12 |
| Apoe | 1.150000e-22 | 4.37134689435605 | 0.52 | 0.118 | 2.30E-18 | 12 |