Male Fertility Gene Atlas

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Table 2: Variants identified by WES and confirmed by Sanger sequencing.

ARAUJO, T. Fenz, et al. Sequence analysis of 37 candidate genes for male infertility: challenges in variant assessment and validating genes. Andrology, 2020, 8. Jg., Nr. 2, S. 434-441.

Publication: https://doi.org/10.1111/andr.12704

Description

ID: Patient Identity, Inh: inheritance pattern, SCOS: Sertoli cell-only syndrome, Mat.A: germ cell maturation arrest, AD: autosomal dominant inheritance, AR: autosomal recessive inheritance, 1/0: variant found in heterozygous status, 1/1: variant found in homozygous status, B: benign prediction, P: possibly or probably pathogenic, T: tolerated, D: deleterious or damaging, N: neutral. 1ESP, 1000 Genomes, gnomAD. 2gnomAD *Dominant variants with frequency > 0.01 (see text for reasons why they were included).

Disclaimer

The publication Sequence analysis of 37 candidate genes for male infertility: Challenges in variant assessment and validating genes by Thais Fenz Araujo, Corinna Friedrich, Carlos Henrique Paiva Grangeiro, Lucia Regina Martelli, J D Grzesiuk, Jana Emich, Margot Julia Wyrwoll, Sabine Kliesch, Aguinaldo Luíz Simões, Frank Tüttelmann is published under an open access license: https://creativecommons.org/licenses/by-nc/4.0/. Share — copy and redistribute the material in any medium or format Adapt — remix, transform, and build upon the material

Curation by the MFGA team

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Table

ARTIFACTID GENE protein Id Phenotype Transcript Inh. Cdna Genotype Polyphen/sift/mutationTaster Cadd>10Damage MaximumAlleleFrequencyInAnySub-population AlleleFrequencyInLatinoPopulation
NM_031271.3 TEX15 p.(Gly2692Arg) M1804 SCOS NM_031271.3 AR c.8074G>A 1/0 P/-/N 24.9 0.005 0.0035
NM_031271.3 TEX15 p.(Ser1990Asn) M1804 SCOS NM_031271.3 AR c.5969G>A 1/0 B/-/N 9.1 0.0257 0.0111
NM_01048205.1 REC8 p.(Arg31Cys) M1809 NOA NM_01048205.1 AD c.91C>T 1/0 P/-/D 35 0.0052 0.001
NM_01129979.1 SYCE1L p.(Leu8Val) M1809 NOA NM_01129979.1 AR c.22C>G 1/0 P/-/- 6.4 0.0386 0.0016
NM_01201457.1 TEX14 p.(Glu1433Lys) M1810 Mat.A NM_01201457.1 AR c.4297G>A 1/0 B/D/D 26.9 0.0039 0
NM_01201457.1 TEX14 p.(Gln243Glu) M1810 Mat.A NM_01201457.1 AR c.727C>G 1/0 P/D/D 25.9 0.012 0.0005
NM_01329595.1 KLHL10 p.(Asn81Ile) M1811 NOA NM_01329595.1 AD c.242A>T 1/0 B/T/D 19.2 0.002 0.0013
NM_006892.3 DNMT3B p.(Val818Met) M1814 NOA NM_006892.3 AD c.2452G>A 1/0 P/D/- 34 0.0001 0
NM_01329595.1 KLHL10 p.(Ile396Thr) M1816 SCOS NM_01329595.1 AD c.887T>C 1/0 B/T/D 23 0.0102* -
NM_021951.2 DMRT1 p.(Asn224Ser) M1816 SCOS NM_021951.2 AD c.671A>G 1/0 P/T/D 25.4 0.0124* 0.0012