Male Fertility Gene Atlas

CRU Male Germ Cells

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Table S7.4-13: Alternative splicing genes in single-cell, Related to Figure 6

CHEN, Yao, et al. Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis. Cell research, 2018, 28. Jg., Nr. 9, S. 879.

Publication: https://doi.org/10.1038/s41422-018-0074-y

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The publication Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis by Yao Chen, Yuxuan Zheng, Yun Gao, Zhen Lin, Suming Yang, Tongtong Wang, Qiu Wang, Nannan Xie, Rong Hua, Mingxi Liu, Jiahao Sha, Michael D. Griswold, Jinsong Li, Fuchou Tang & Ming-Han Tong is published under an open access license: https://creativecommons.org/licenses/by/4.0/. Permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as appropriate credit is given to the original author(s) and the source, a link to the Creative Commons license is provided, and changes are indicated.

Curation by the MFGA team

Pie chart of selected column

Table

GENE PVALUE Stage Fdr Avg_diff
2810403A07Rik 6.437033e-05 A1 0.000772443964849 2.14832719147033
Cwc27 3.596751e-06 A1 0.000129483041063 2.09394253351858
Ddx41 1.043061e-02 A1 0.021742920143735 1.5735733970492
Usb1 6.770539e-03 A1 0.017409956592783 1.44858052092497
Rnps1 4.385801e-03 A1 0.014353531858076 1.3164334843384
Lsm8 1.670617e-02 A1 0.027337370082799 1.31020011121696
Ddx19b 1.708603e-03 A1 0.007688712912827 1.28119775568953
Mettl14 2.289313e-02 A1 0.035832731610286 1.2642249962048
Rbm4b 8.642691e-04 A1 0.005185614711313 1.23746615721068
Zrsr2 2.032682e-03 A1 0.008130727485752 1.19678529034204
Sf3a2 6.455489e-03 A1 0.017409956592783 1.19633227764697
Aar2 1.218791e-04 A1 0.001096911616762 1.18591213794912
Scaf1 8.441088e-03 A1 0.018992447206031 1.18026473580394
Lsm7 1.666877e-03 A1 0.007688712912827 1.14117173444968
Akap17b 2.586739e-05 A1 0.00046561301722 1.09634788130755
Sf3a1 7.655157e-03 A1 0.018372376417683 1.09380526099905
Slu7 6.318647e-03 A1 0.017409956592783 1.09101894903936
Pabpc1 4.146876e-03 A1 0.014353531858076 1.09070351080195
Rbm5 1.189749e-02 A1 0.022542610389227 1.08584975869623
Lsm2 3.390511e-02 A1 0.049137422022916 1.05649002078925
Strap 1.431259e-02 BS 0.024535875087027 -1.67146320413974
Srsf2 1.391067e-02 BS 0.024535875087027 -1.55528812011074
Prpf18 5.218050e-04 BS 0.003756996295973 -1.53267445691835
Tsen34 1.087146e-02 BS 0.021742920143735 -1.38692944861817
Mbnl3 3.548814e-02 BS 0.049137422022916 -1.11467529161909
Hnrnpll 3.546223e-02 BS 0.049137422022916 -1.08480185200502
Malat1 6.016435e-04 BS 0.024667384468124 1.56611230333032
Thoc5 8.930903e-05 lPL 0.004018906541846 -2.43627102285128
Clasrp 8.785946e-05 lPL 0.003075081149975 2.34611203795526
Gemin6 3.218299e-06 L 0.000225280932743 -4.31695335944271
Gemin6 1.944995e-03 L 0.047976553564076 2.85358305316151
Ppp1r8 2.022806e-04 Z 0.007484381603217 -2.42972663342319
Ncbp1 2.313237e-05 Z 0.001711795592588 -1.7543072238709
Tsen15 3.464068e-04 Z 0.010911814437502 3.11516488331097
Rheb 1.021124e-02 Z 0.037841640531585 1.63728217632332
Ddx17 4.690549e-03 Z 0.021450103927068 1.12290051759855
Ddx5 4.766690e-03 Z 0.021450103927068 1.02784935269417
Snrnp25 8.087926e-03 eP 0.033969289009643 -2.54325052632314
Tra2a 3.915974e-03 eP 0.021450103927068 -1.86750089791439
Khdrbs3 1.734060e-03 eP 0.013655721523105 -1.85517807081198
Ddx25 1.009400e-04 eP 0.006359221155134 -1.82085486630714
Ddx41 9.738383e-03 eP 0.037841640531585 -1.6461218471898
Ccar2 7.261843e-04 eP 0.013318624025614 -1.64300090621977
Sf1 3.715995e-03 eP 0.021450103927068 -1.60276586626288
Ddx39 1.333783e-03 eP 0.013655721523105 -1.52052281096378
Sf3b2 1.025108e-03 eP 0.013318624025614 -1.42183704446672
Zmat5 1.132366e-02 eP 0.0396328064976 -1.32046142163643
Hnrnpl 1.573042e-02 eP 0.047191247628308 -1.31840878503366
Prpf31 1.233727e-02 eP 0.040546970355475 -1.31795192639398
Bcas2 1.057034e-03 eP 0.013318624025614 -1.28635780392002
Lsm6 4.086109e-03 eP 0.021450103927068 -1.21344367831931
Sf3b3 3.831902e-03 eP 0.021450103927068 -1.07926494641078
Sf3a2 1.287205e-02 eP 0.040546970355475 -1.06093950582563
Snrpb 1.569654e-03 eP 0.013655721523105 -1.00155921576702
Rbm7 2.320310e-02 eP 0.040605430567572 1.17639489848923
Magohb 1.642483e-02 eP 0.040061888706237 1.12217116870723
Lsm7 1.875338e-03 eP 0.013127367305635 1.05816618531314
Snrpd3 9.199593e-03 eP 0.032198576345275 1.0526720756443
Rbm22 2.037083e-02 eP 0.040605430567572 1.02955744765549
Hspa8 3.651303e-03 eP 0.017039414870174 1.01381496875064
Phf5a 1.716938e-02 eP 0.040061888706237 1.00187251612629
Dcps 1.764952e-03 mP 0.013127367305635 -1.82956159002484
Tmbim6 2.295293e-03 mP 0.018362345492232 1.23590204979261
Lsm8 1.065330e-05 lP 0.000148984520964 3.01524055259742
Hspa8 1.314118e-05 lP 0.000148984520964 2.27463700980801
Rbm17 2.181532e-05 lP 0.000148984520964 2.15576733592964
Bcas2 2.810275e-05 lP 0.000148984520964 2.15213788123967
Lsm5 8.413814e-04 lP 0.002397936965953 2.13051462878289
Ddx39 3.993502e-06 lP 0.000113814819678 2.12257330973331
Srsf6 1.175754e-04 lP 0.000478699677204 1.97844856958407
Hnrnpa2b1 2.595318e-05 lP 0.000148984520964 1.95627812075731
Ppil3 1.915141e-04 lP 0.000682268811766 1.95265437947934
Snrpe 2.950292e-04 lP 0.000934259211418 1.92868498601289
Snrpb 1.562729e-05 lP 0.000148984520964 1.87283707106714
Rnps1 3.397893e-05 lP 0.000148984520964 1.6161462327786
Hnrnpk 2.111264e-06 lP 0.000113814819678 1.57385216624399
Lsm10 3.221758e-02 lP 0.036007879075109 1.55651758603838
Snrnp40 1.350131e-03 lP 0.00285027677476 1.5187315147883
Snrpb2 1.413848e-03 lP 0.00287819101336 1.43970252804656
Snrpd1 8.317393e-03 lP 0.01185228495741 1.43642488976279
Gemin2 3.893393e-03 lP 0.006296272492706 1.3981968163508
Zfp326 1.129556e-03 lP 0.002682695699021 1.36912774421989
Snrpf 3.735402e-04 lP 0.001120620650326 1.36070784589634
Zmat2 1.711198e-04 lP 0.000650255335983 1.34443610546576
Arl6ip4 3.731693e-03 lP 0.006256073964053 1.31662938541782
Srsf3 2.935031e-05 lP 0.000148984520964 1.30314986408266
Hnrnpm 1.719119e-03 lP 0.003378957775242 1.28451477704417
Luc7l 6.582712e-03 lP 0.009874068114458 1.28123784539305
Wdr83 1.126910e-03 lP 0.002682695699021 1.27021022871554
Ddx39b 2.243813e-02 lP 0.027803766016203 1.2640294970207
Rbm39 2.835368e-05 lP 0.000148984520964 1.25257925521271
Rtcb 9.824582e-04 lP 0.002614172407107 1.24853259680529
Thoc6 7.234888e-03 lP 0.010574067717834 1.1878326146276
Ppie 2.334073e-02 lP 0.027841222396046 1.18577500271009
Smn1 2.164446e-02 lP 0.027416321437176 1.18428447254913
Lsm6 1.238740e-03 lP 0.002770064205978 1.17097578658624
Rheb 2.139848e-05 lP 0.000148984520964 1.16956172521218
Cwc27 2.344524e-02 lP 0.027841222396046 1.16806840948176
Rbm8a 1.263538e-03 lP 0.002770064205978 1.15915726756473
Rbm7 3.656200e-02 lP 0.039321391780705 1.1573682140199
Ptbp2 2.692589e-03 lP 0.004874596465869 1.15727748360701
Snrnp70 2.736616e-03 lP 0.004874596465869 1.15289270931182
Ddx41 9.039279e-03 lP 0.01256680268618 1.12471937194015
Lsm7 2.727022e-03 lP 0.004874596465869 1.11648739778432
Sf3b3 5.797368e-03 lP 0.008931080761352 1.10359844236968
Magohb 3.632940e-02 lP 0.039321391780705 1.07785300593893
Usp39 2.097844e-02 lP 0.027176618290038 1.06736911052685
Lsm3 2.850156e-03 lP 0.004922996099262 1.03819936650112
Snrpa1 2.949049e-02 lP 0.033619153571244 1.02371517785513
Hnrnph1 1.706815e-02 lP 0.022625216350374 1.02208883616162
Prmt5 1.469860e-02 lP 0.019948098871154 1.01787014917701
Crnkl1 2.455222e-02 lP 0.0285607430409 1.01511174032746
Rnf113a2 1.008979e-03 D 0.002614172407107 -2.03787910083333
Txnl4b 3.373272e-05 D 0.000148984520964 -1.3850090242788
Cir1 3.976593e-03 D 0.006296272492706 -1.08307837265564
Rbm15 2.433196e-04 D 0.000815836400523 -1.04626338521147
Lsm8 2.486451e-03 D 0.011810642464505 1.65526363773054
Ddx39b 2.860485e-02 D 0.045291005578604 1.62964387828446
Lsm3 2.169660e-02 D 0.041223534736285 1.61872474924767
Psip1 1.654740e-03 D 0.010480017712869 1.51855100151484
Srsf5 1.445583e-03 D 0.010480017712869 1.31937893975466
Sf3b6 9.268515e-03 D 0.019566864001041 1.18889553622481
Hnrnph1 2.723693e-02 D 0.045291005578604 1.18062263012358
Api5 4.327178e-03 D 0.012169326892462 1.00721459893596
Smndc1 2.834688e-04 RS2 0.005385907647047 -1.3405912372843
Tmbim6 3.141372e-03 RS2 0.011937213501673 -1.28270315676778
Rbm4b 4.661821e-03 RS2 0.012169326892462 -1.25378690994589
Dhx15 5.123927e-03 RS2 0.012169326892462 -1.15184259497853
Thoc7 5.643484e-05 RS2 0.000484338748312 3.65473478039793
Snrpe 2.838836e-04 RS2 0.001305864411418 3.65112170626412
Snrpc 1.995084e-03 RS2 0.004370183722361 3.60475960058145
Snrpd3 3.766218e-03 RS2 0.007532436632088 3.33079147488259
Lsm7 4.028817e-03 RS2 0.007727973527569 3.25460569103585
Eif4a3 1.272339e-04 RS2 0.000702330880787 3.23993009678912
Snrpb2 8.318857e-03 RS2 0.012755580589163 3.22168683076349
Ecd 9.724373e-05 RS2 0.000641948549863 2.92523203687884
Sf3b2 3.220715e-05 RS2 0.000404053286569 2.92098001388665
Magoh 1.945754e-02 RS2 0.026324912527098 2.89345733773439
Hnrnpk 9.707079e-06 RS2 0.000191368135808 2.78387759365149
Wbp11 2.123494e-04 RS2 0.00104657923269 2.76722203875497
Mterf3 5.966014e-05 RS2 0.000484338748312 2.7134041567141
Rnf113a2 9.768782e-05 RS2 0.000641948549863 2.67550219128349
Tra2b 5.322195e-05 RS2 0.000484338748312 2.61007975371335
Khdrbs3 4.867494e-05 RS2 0.000484338748312 2.53079312272211
Eftud2 7.937250e-06 RS2 0.000191368135808 2.51920611693081
Snrpb 1.369686e-03 RS2 0.003500307924172 2.51544761252417
Snrpd1 4.804602e-04 RS2 0.00170008998958 2.41872601236402
Snrpa1 6.564823e-05 RS2 0.000484338748312 2.41547500781895
Snrnp25 1.750805e-03 RS2 0.003896953940426 2.4086346285881
Sugp2 4.350354e-04 RS2 0.001683289107424 2.3899427466959
Plrg1 7.809493e-03 RS2 0.012275069671863 2.35079376708515
Ik 5.635284e-05 RS2 0.000484338748312 2.32721497089492
Aar2 2.149742e-02 RS2 0.02852542235261 2.3141451237528
Snrnp35 2.815012e-02 RS2 0.033780147401777 2.31254578237937
Rsrc1 1.912036e-05 RS2 0.000329694141078 2.27073475616805
Rp9 8.062369e-08 RS2 5.56303471719411E-06 2.25168282683894
Usb1 7.939836e-03 RS2 0.012311206497479 2.21671473696896
Clns1a 9.097270e-07 RS2 4.18474410879299E-05 2.20470217327943
Srsf7 1.605298e-03 RS2 0.003692186286134 2.16937518741427
Rheb 1.529647e-03 RS2 0.003650535934779 2.15752913994692
Thoc1 7.840413e-04 RS2 0.002271969177753 2.1385867400605
Ptbp1 8.334330e-04 RS2 0.002271969177753 2.13249884217632
Ddx46 1.083060e-04 RS2 0.000678602162087 2.12560753684153
Rbm8a 5.536387e-04 RS2 0.001819098711162 2.08764275825628
Psip1 2.038536e-03 RS2 0.004395593247109 2.07832785434342
Xab2 6.064950e-08 RS2 5.56303471719411E-06 2.04667697991261
Npm1 7.803070e-03 RS2 0.012275069671863 2.02151382891085
Ncbp1 9.774705e-03 RS2 0.014051138850728 1.99799605657138
Smu1 7.449612e-03 RS2 0.012238647681495 1.99336326324013
Frg1 6.997804e-03 RS2 0.011776792879135 1.98818504166497
Rbmxl1 3.902700e-02 RS2 0.043786390287128 1.91189823023004
Strap 4.660072e-03 RS2 0.008690405207891 1.88323373004736
Dhx16 1.131004e-04 RS2 0.000678602162087 1.87071735315451
Txnl4b 1.534283e-03 RS2 0.003650535934779 1.86685082031643
Wac 3.112071e-04 RS2 0.001385373399058 1.85816202349304
Snrpf 2.147577e-03 RS2 0.004559472189222 1.85725682248083
Pspc1 9.460248e-03 RS2 0.013888449770772 1.83547114783037
Wdr62 5.318985e-04 RS2 0.001790292407594 1.82405699934782
Rtcb 3.858731e-02 RS2 0.043647944122663 1.81664465427152
Clp1 3.893994e-03 RS2 0.007676731076511 1.79925826825248
Snrpg 6.435175e-03 RS2 0.011241191622931 1.76945964746776
Lsm2 6.659423e-04 RS2 0.002088637249527 1.74556913153315
Zmat2 1.781537e-04 RS2 0.000945585274746 1.72147048703573
Ddx1 1.477823e-03 RS2 0.003641778528074 1.71547407424308
Cwc15 1.980861e-04 RS2 0.001012440259761 1.69833916077917
Prpf38b 3.680094e-03 RS2 0.007468426234981 1.67264439066948
Magohb 2.536666e-02 RS2 0.032115594066025 1.62524361252626
Ddx41 2.441049e-05 RS2 0.000336864700987 1.62010177240911
Ddx39 9.321093e-03 RS2 0.013831299529284 1.60893585659659
Setx 1.236184e-03 RS2 0.003218743352634 1.58787191545738
Raver1 6.556619e-04 RS2 0.002088637249527 1.57619842012786
Prmt7 7.134849e-03 RS2 0.011862760561237 1.55230008567535
Cdc5l 2.242672e-02 RS2 0.029475121404057 1.54875525176682
Wdr83 2.713950e-02 RS2 0.03346125862121 1.5431563025874
Prpf31 6.755434e-03 RS2 0.01165312403204 1.5311367437116
Dhx15 8.396408e-04 RS2 0.002271969177753 1.52860213133491
Snrpa 4.519733e-04 RS2 0.001685738111055 1.51283945923009
Dhx38 8.344991e-04 RS2 0.002271969177753 1.51263118139934
Hspa8 2.688832e-02 RS2 0.03346125862121 1.50428980759414
Srsf3 5.353055e-03 RS2 0.009720021533132 1.4965188337339
Sf3b1 9.118669e-04 RS2 0.002419954413091 1.47738376529284
Dhx40 1.538269e-02 RS2 0.021228114750567 1.47587046351886
Akt2 2.206820e-03 RS2 0.004614259116062 1.45641616969545
Usp4 4.726898e-03 RS2 0.008697492847471 1.45600468870947
Hnrnpm 3.050972e-02 RS2 0.036296041265678 1.44692593936023
Rbm39 4.771780e-04 RS2 0.00170008998958 1.43911352626283
Sf3a3 1.132143e-02 RS2 0.01610677645338 1.43516724061982
Rps13 7.661371e-04 RS2 0.002271969177753 1.43367186667931
Snw1 9.586065e-03 RS2 0.013925020573978 1.41383263759592
Lsm1 2.462183e-02 RS2 0.031755254057092 1.41183460434779
Prpf40a 4.258720e-04 RS2 0.001683289107424 1.39499800323117
Txnl4a 2.496026e-02 RS2 0.03189367171388 1.38323861786123
Ddx25 2.150179e-05 RS2 0.000329694141078 1.37010296116777
Wbp4 3.603337e-04 RS2 0.001553939196517 1.32365439303418
Rps26 1.707684e-03 RS2 0.00386328602466 1.31126150767486
Lsm10 2.392158e-02 RS2 0.031143191187626 1.28571018905964
Prpf3 3.851012e-04 RS2 0.001610423141234 1.28329945675004
Srsf10 1.461925e-03 RS2 0.003641778528074 1.28325878997434
Snrnp40 1.375491e-02 RS2 0.019369152615414 1.26364188258327
Thoc5 3.132902e-02 RS2 0.036639017609253 1.26108131596345
Morf4l1 7.722244e-04 RS2 0.002271969177753 1.26099305226167
Crnkl1 1.969018e-02 RS2 0.026381015967538 1.2555422514887
Phf5a 4.288165e-02 RS2 0.047614277511146 1.25367559559608
Prdx6 6.153978e-03 RS2 0.010887806850708 1.2396690705967
Prpf6 2.806940e-04 RS2 0.001305864411418 1.23820826401671
Skiv2l2 4.394317e-03 RS2 0.008307065811532 1.20779238844393
Prmt5 7.827581e-03 RS2 0.012275069671863 1.19178156588745
Srrm1 1.572155e-03 RS2 0.003677243691818 1.1893046019928
Thoc3 2.796934e-02 RS2 0.033780147401777 1.17900176816254
2810403A07Rik 2.752899e-02 RS2 0.033619473621583 1.17438394413812
Smndc1 1.490758e-02 RS2 0.020780256883313 1.17019162640316
Gemin7 3.116019e-02 RS2 0.036639017609253 1.16700659626893
Lsm4 1.881882e-02 RS2 0.025712849274404 1.16510333086992
Ctnnbl1 8.915877e-03 RS2 0.013373814995488 1.14697347776479
Snrnp200 9.480214e-06 RS2 0.000191368135808 1.11911098637279
Zcrb1 5.741799e-03 RS2 0.010290496271341 1.10383360900278
Luc7l 3.417625e-02 RS2 0.039302689997417 1.02964378624532
Sugp1 2.715696e-02 RS2 0.03346125862121 1.02056782894784
Rbm25 8.832682e-03 RS2 0.013373814995488 1.01540902527785
Sf3a2 4.391189e-04 RS2 0.001683289107424 1.01297957882655
Rbm15 6.984520e-03 RS2 0.011776792879135 1.00948184594287
Rbm4b 1.238265e-04 RS8 0.000702330880787 -2.37205667907129
Clk4 8.215290e-04 RS8 0.002271969177753 -2.36193110781755
Rbm28 6.337397e-05 RS8 0.000484338748312 -2.1057915116144
Srpk2 6.668432e-05 RS8 0.000484338748312 -1.86999714844621
Lmntd2 7.591525e-03 RS8 0.012275069671863 -1.688667818782
Bcas2 5.169792e-04 RS8 0.0017835781591 -1.66905671782962
Habp4 2.739780e-03 RS8 0.005643129472133 -1.65002485258229
Pcbp4 4.031986e-03 RS8 0.007727973527569 -1.61312862981227
Rbm4 3.636690e-06 RS8 0.000125465801272 -1.43151129843474
Ranbp9 4.312887e-02 RS8 0.047614277511146 -1.38541984103827
Rbm7 3.816755e-02 RS8 0.043529934682285 -1.29068747384359
Snrpn 3.295396e-02 RS8 0.038215516549919 -1.00841917457379