Table S1, related to Figure 1 D: Human Top Ten Differentially Expressed Genes (DEGs) between Cell Clusters
HERMANN, Brian P., et al. The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids. Cell reports, 2018, 25. Jg., Nr. 6, S. 1650-1667. e8.
Publication: https://doi.org/10.1016/j.celrep.2018.10.026
Description
Disclaimer
The publication The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids by Brian P. Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N. Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D. Lehle, Max Mayo, Birgit Westernströer, Nathan C. Law, Melissa J. Oatley, Ellen K. Velte, Bryan A. Niedenberger, Danielle Fritze, Sherman Silber, Christopher B. Geyer, Jon M. Oatley, John R. McCarrey is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.
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Table
| GENE | PVALUE | No | Avg_logfc | Pct.1 | Pct.2 | P_val_adj | Cluster |
|---|---|---|---|---|---|---|---|
| PRM2 | 0.000000e+00 | 1 | 2.59665138413634 | 1 | 1 | 0 | 0 |
| PRM1 | 0.000000e+00 | 2 | 2.37935653342867 | 1 | 1 | 0 | 0 |
| LELP1 | 0.000000e+00 | 3 | 2.13840534640637 | 0.999 | 0.927 | 0 | 0 |
| AC007557.1 | 0.000000e+00 | 4 | 2.12014685618039 | 0.967 | 0.806 | 0 | 0 |
| TSSK6 | 0.000000e+00 | 5 | 2.00258798034474 | 0.999 | 0.504 | 0 | 0 |
| C10orf62 | 0.000000e+00 | 6 | 1.94987229417122 | 0.999 | 0.725 | 0 | 0 |
| GLUL | 0.000000e+00 | 7 | 1.94519726779444 | 0.999 | 0.747 | 0 | 0 |
| SPATA3 | 0.000000e+00 | 8 | 1.87502902476446 | 0.993 | 0.581 | 0 | 0 |
| TNP1 | 0.000000e+00 | 9 | 1.86501163136943 | 1 | 0.995 | 0 | 0 |
| OAZ3 | 0.000000e+00 | 10 | 1.84142780977221 | 0.998 | 0.788 | 0 | 0 |
| FAM24A | 0.000000e+00 | 11 | 1.42720876362391 | 0.997 | 0.259 | 0 | 1 |
| EQTN | 0.000000e+00 | 12 | 1.20944831054553 | 0.995 | 0.419 | 0 | 1 |
| LYZL1 | 0.000000e+00 | 13 | 1.19947799102373 | 0.992 | 0.424 | 0 | 1 |
| C4orf17 | 0.000000e+00 | 14 | 1.15417091429261 | 0.993 | 0.295 | 0 | 1 |
| LRRC39 | 0.000000e+00 | 15 | 1.14464160337897 | 0.972 | 0.242 | 0 | 1 |
| TJP3 | 0.000000e+00 | 16 | 1.130271359172 | 0.985 | 0.308 | 0 | 1 |
| NLRP1 | 0.000000e+00 | 17 | 1.11463328075809 | 0.996 | 0.509 | 0 | 1 |
| RP11-639B1.1 | 0.000000e+00 | 18 | 1.10834834353385 | 0.97 | 0.333 | 0 | 1 |
| RP13-39P12.3 | 0.000000e+00 | 19 | 1.10250812939269 | 0.991 | 0.377 | 0 | 1 |
| GOLGA6L2 | 3.150000e-306 | 20 | 1.532577448055 | 0.919 | 0.335 | 9.01E-302 | 1 |
| RP5-1023B21.1 | 0.000000e+00 | 21 | 1.67500742906748 | 0.997 | 0.683 | 0 | 2 |
| PRKCDBP | 0.000000e+00 | 22 | 1.43072315319987 | 0.993 | 0.567 | 0 | 2 |
| ISOC2 | 0.000000e+00 | 23 | 1.35799219596021 | 0.995 | 0.457 | 0 | 2 |
| TBPL1 | 0.000000e+00 | 24 | 1.32353134816046 | 0.996 | 0.762 | 0 | 2 |
| CCNA1 | 0.000000e+00 | 25 | 1.31949027879797 | 0.993 | 0.556 | 0 | 2 |
| LYAR | 0.000000e+00 | 26 | 1.31835980554224 | 0.995 | 0.611 | 0 | 2 |
| AURKA | 0.000000e+00 | 27 | 1.30878000139076 | 0.992 | 0.423 | 0 | 2 |
| PPP3R2 | 0.000000e+00 | 28 | 1.29029830539431 | 0.996 | 0.665 | 0 | 2 |
| CCDC42 | 0.000000e+00 | 29 | 1.27097575019612 | 0.995 | 0.522 | 0 | 2 |
| GLIPR1L1 | 0.000000e+00 | 30 | 1.26774633778466 | 0.991 | 0.521 | 0 | 2 |
| LINC00919 | 0.000000e+00 | 31 | 2.11235840665049 | 1 | 0.511 | 0 | 3 |
| FAM71A | 0.000000e+00 | 32 | 1.94268971360803 | 0.981 | 0.395 | 0 | 3 |
| FAM71B | 0.000000e+00 | 33 | 1.75610386503497 | 0.997 | 0.249 | 0 | 3 |
| PRSS58 | 0.000000e+00 | 34 | 1.72714176410773 | 0.987 | 0.241 | 0 | 3 |
| RNF151 | 0.000000e+00 | 35 | 1.67152746646301 | 1 | 0.648 | 0 | 3 |
| HEMGN | 0.000000e+00 | 36 | 1.64815439727056 | 0.998 | 0.392 | 0 | 3 |
| CCDC179 | 0.000000e+00 | 37 | 1.57982795040351 | 0.998 | 0.365 | 0 | 3 |
| C1orf100 | 0.000000e+00 | 38 | 1.52227281319554 | 0.997 | 0.454 | 0 | 3 |
| C17orf105 | 0.000000e+00 | 39 | 1.41216225241095 | 0.997 | 0.605 | 0 | 3 |
| TNP1 | 2.670000e-280 | 40 | 1.78335550504008 | 1 | 0.995 | 7.65E-276 | 3 |
| TMEM190 | 0.000000e+00 | 41 | 1.63096465572385 | 0.993 | 0.4 | 0 | 4 |
| CCDC168 | 0.000000e+00 | 42 | 1.5317925275822 | 0.856 | 0.155 | 0 | 4 |
| TEX29 | 0.000000e+00 | 43 | 1.4702894604747 | 0.989 | 0.311 | 0 | 4 |
| OLAH | 0.000000e+00 | 44 | 1.41866499859536 | 0.989 | 0.389 | 0 | 4 |
| TEX43 | 0.000000e+00 | 45 | 1.40356594584152 | 0.989 | 0.356 | 0 | 4 |
| ACRV1 | 7.110000e-301 | 46 | 1.38562126232487 | 0.995 | 0.477 | 2.03E-296 | 4 |
| ERICH2 | 2.870000e-300 | 47 | 1.39888206364572 | 1 | 0.667 | 8.22E-296 | 4 |
| SPACA1 | 1.870000e-289 | 48 | 1.40080193918502 | 0.991 | 0.504 | 5.35E-285 | 4 |
| FAM209B | 1.630000e-287 | 49 | 1.40303587386863 | 1 | 0.629 | 4.66E-283 | 4 |
| FAM209A | 3.550000e-280 | 50 | 1.41776705231432 | 1 | 0.597 | 1.02E-275 | 4 |
| ZNF428 | 0.000000e+00 | 51 | 2.13854253193154 | 0.99 | 0.601 | 0 | 5 |
| HMGA1 | 0.000000e+00 | 52 | 2.0452369480976 | 1 | 0.321 | 0 | 5 |
| RPS4X | 0.000000e+00 | 53 | 2.03944170557795 | 0.996 | 0.311 | 0 | 5 |
| GNB2L1 | 1.600000e-301 | 54 | 1.89456079045105 | 1 | 0.898 | 4.59E-297 | 5 |
| RPS12 | 4.420000e-298 | 55 | 1.97735942507857 | 1 | 0.991 | 1.26E-293 | 5 |
| EEF1B2 | 7.200000e-297 | 56 | 1.69441638904338 | 1 | 0.845 | 2.06E-292 | 5 |
| RPL18 | 1.010000e-285 | 57 | 1.91191496243561 | 1 | 0.737 | 2.91E-281 | 5 |
| CCNI | 1.320000e-284 | 58 | 1.96695953215389 | 1 | 0.66 | 3.78E-280 | 5 |
| RPSA | 9.470000e-279 | 59 | 1.90982677298442 | 1 | 0.896 | 2.71E-274 | 5 |
| RPS2 | 8.480000e-270 | 60 | 2.02490942232843 | 1 | 0.912 | 2.43E-265 | 5 |
| TEX101 | 0.000000e+00 | 61 | 2.54249584024248 | 0.99 | 0.257 | 0 | 6 |
| ZCWPW1 | 0.000000e+00 | 62 | 2.3892906718948 | 1 | 0.553 | 0 | 6 |
| SCML1 | 0.000000e+00 | 63 | 2.30723729852658 | 0.963 | 0.228 | 0 | 6 |
| SMC1B | 0.000000e+00 | 64 | 2.27576870313803 | 0.998 | 0.509 | 0 | 6 |
| MEIOB | 0.000000e+00 | 65 | 2.23563173143572 | 0.919 | 0.204 | 0 | 6 |
| SYCP3 | 0.000000e+00 | 66 | 2.18083841185278 | 1 | 0.51 | 0 | 6 |
| RAD51AP2 | 0.000000e+00 | 67 | 2.14405474510629 | 0.765 | 0.095 | 0 | 6 |
| HIST1H4C | 0.000000e+00 | 68 | 2.13708635395564 | 0.996 | 0.289 | 0 | 6 |
| SMC3 | 3.710000e-303 | 69 | 2.17390661639292 | 1 | 0.548 | 1.06E-298 | 6 |
| SYCP1 | 7.050000e-112 | 70 | 2.37525598909871 | 0.767 | 0.586 | 2.02E-107 | 6 |
| SMS | 0.000000e+00 | 71 | 1.56493993772537 | 0.955 | 0.189 | 0 | 7 |
| ASB9 | 0.000000e+00 | 72 | 1.5596172044968 | 0.803 | 0.068 | 0 | 7 |
| CST3 | 7.640000e-275 | 73 | 1.72899694683399 | 0.994 | 0.469 | 2.19E-270 | 7 |
| PFN1 | 3.540000e-244 | 74 | 1.57345577039824 | 0.981 | 0.519 | 1.01E-239 | 7 |
| PABPC4 | 9.930000e-241 | 75 | 1.63150421993294 | 0.968 | 0.55 | 2.84E-236 | 7 |
| RPL18A | 1.440000e-228 | 76 | 1.69255171924066 | 0.998 | 0.606 | 4.13E-224 | 7 |
| RPS19 | 3.380000e-225 | 77 | 1.65233084391159 | 1 | 0.958 | 9.69E-221 | 7 |
| CCNI | 2.640000e-220 | 78 | 1.70774868860173 | 0.987 | 0.663 | 7.56E-216 | 7 |
| MT-CO1 | 3.920000e-200 | 79 | 1.58098117466829 | 0.996 | 0.922 | 1.12E-195 | 7 |
| MT-CO3 | 5.750000e-191 | 80 | 1.55332892573244 | 0.998 | 0.953 | 1.65E-186 | 7 |
| CETN3 | 5.740000e-285 | 81 | 2.12843068537855 | 0.998 | 0.442 | 1.64E-280 | 8 |
| CCDC112 | 6.220000e-285 | 82 | 1.68351442976894 | 0.978 | 0.361 | 1.78E-280 | 8 |
| RP11-620J15.3 | 3.650000e-254 | 83 | 2.04748123305411 | 1 | 0.59 | 1.05E-249 | 8 |
| OVOS2 | 5.180000e-247 | 84 | 2.02752315559887 | 0.953 | 0.416 | 1.48E-242 | 8 |
| CALM2 | 2.000000e-243 | 85 | 1.81316889256411 | 1 | 0.889 | 5.72E-239 | 8 |
| RNFT1 | 3.450000e-242 | 86 | 1.61985133890958 | 0.99 | 0.61 | 9.87E-238 | 8 |
| HSPA2 | 2.390000e-240 | 87 | 1.64296238041207 | 0.995 | 0.509 | 6.85E-236 | 8 |
| SPATA8 | 2.200000e-239 | 88 | 1.69913752967291 | 1 | 0.665 | 6.30E-235 | 8 |
| TMEM99 | 4.060000e-238 | 89 | 1.53432445518419 | 0.998 | 0.677 | 1.16E-233 | 8 |
| C15orf48 | 5.640000e-228 | 90 | 1.5111171776886 | 1 | 0.744 | 1.62E-223 | 8 |
| DMRT1 | 1.870000e-306 | 91 | 1.45287400086913 | 0.964 | 0.207 | 5.34E-302 | 9 |
| PRAME | 3.970000e-238 | 92 | 1.47649906732188 | 0.994 | 0.339 | 1.14E-233 | 9 |
| IGFBP2 | 5.780000e-238 | 93 | 1.55483093578921 | 1 | 0.305 | 1.66E-233 | 9 |
| TKTL1 | 2.660000e-224 | 94 | 1.70610955913543 | 1 | 0.408 | 7.62E-220 | 9 |
| CIRBP | 9.570000e-204 | 95 | 1.7242254064232 | 1 | 0.541 | 2.74E-199 | 9 |
| ANP32B | 4.410000e-189 | 96 | 1.45328069756581 | 0.997 | 0.575 | 1.26E-184 | 9 |
| PTMA | 1.090000e-177 | 97 | 1.69839790200477 | 1 | 0.787 | 3.11E-173 | 9 |
| HIST1H4C | 1.140000e-174 | 98 | 1.5191208158411 | 0.985 | 0.307 | 3.27E-170 | 9 |
| HMGB1 | 1.120000e-169 | 99 | 1.46622623256637 | 1 | 0.75 | 3.22E-165 | 9 |
| RPS2 | 1.010000e-159 | 100 | 1.59101392709208 | 1 | 0.915 | 2.88E-155 | 9 |
| CDRT15 | 1.790000e-173 | 101 | 0.946286687514257 | 0.97 | 0.388 | 5.11E-169 | 10 |
| LINC00643 | 1.710000e-171 | 102 | 1.11386996072259 | 0.976 | 0.513 | 4.89E-167 | 10 |
| CFAP126 | 7.790000e-164 | 103 | 0.869021840268074 | 0.958 | 0.394 | 2.23E-159 | 10 |
| C11orf97 | 9.360000e-155 | 104 | 0.954307237575437 | 0.961 | 0.479 | 2.68E-150 | 10 |
| MNS1 | 4.600000e-139 | 105 | 0.949147905452818 | 0.997 | 0.629 | 1.32E-134 | 10 |
| C9orf116 | 5.890000e-139 | 106 | 0.856264883852404 | 0.997 | 0.735 | 1.68E-134 | 10 |
| MCHR2-AS1 | 7.120000e-116 | 107 | 0.869588615741179 | 1 | 0.579 | 2.04E-111 | 10 |
| GOLGA6L2 | 2.960000e-115 | 108 | 0.903169864959313 | 0.919 | 0.372 | 8.48E-111 | 10 |
| LYRM5 | 1.980000e-114 | 109 | 0.856459028591962 | 0.997 | 0.673 | 5.66E-110 | 10 |
| CCDC110 | 1.610000e-106 | 110 | 0.862953065249413 | 1 | 0.639 | 4.62E-102 | 10 |
| AURKA | 1.390000e-143 | 111 | 1.17929759305167 | 0.996 | 0.464 | 3.99E-139 | 11 |
| CCNA1 | 3.370000e-134 | 112 | 1.2258024649161 | 1 | 0.588 | 9.65E-130 | 11 |
| CLGN | 1.720000e-129 | 113 | 1.28168810559451 | 1 | 0.6 | 4.93E-125 | 11 |
| PRKCDBP | 2.270000e-126 | 114 | 1.27602507011439 | 0.996 | 0.598 | 6.51E-122 | 11 |
| CIAPIN1 | 1.510000e-125 | 115 | 1.20579288059806 | 1 | 0.557 | 4.32E-121 | 11 |
| PPP3R2 | 6.840000e-124 | 116 | 1.24516879542176 | 1 | 0.689 | 1.96E-119 | 11 |
| RP5-1023B21.1 | 5.930000e-122 | 117 | 1.40002286967285 | 1 | 0.706 | 1.70E-117 | 11 |
| ASRGL1 | 4.100000e-119 | 118 | 1.20370845964424 | 1 | 0.808 | 1.17E-114 | 11 |
| ZMYND10 | 1.480000e-118 | 119 | 1.19323280463282 | 1 | 0.697 | 4.23E-114 | 11 |
| SPATA8 | 1.430000e-103 | 120 | 1.19366733256052 | 1 | 0.672 | 4.10E-99 | 11 |
| DPP10-AS3 | 4.900000e-155 | 121 | 0.9688953692949 | 0.982 | 0.272 | 1.40E-150 | 12 |
| LRRC39 | 1.940000e-147 | 122 | 1.02444278328135 | 0.982 | 0.299 | 5.55E-143 | 12 |
| FAM24A | 3.990000e-138 | 123 | 1.15024664356583 | 0.991 | 0.318 | 1.14E-133 | 12 |
| RP11-639B1.1 | 1.300000e-125 | 124 | 0.982311090534306 | 1 | 0.383 | 3.72E-121 | 12 |
| RP13-39P12.3 | 2.310000e-107 | 125 | 0.979770182479172 | 0.991 | 0.426 | 6.61E-103 | 12 |
| PEX5L-AS2 | 1.290000e-103 | 126 | 0.967929759541931 | 0.991 | 0.451 | 3.69E-99 | 12 |
| C7orf61 | 1.390000e-98 | 127 | 0.949906642785288 | 0.991 | 0.556 | 3.97E-94 | 12 |
| LYZL1 | 5.680000e-98 | 128 | 0.949456640524586 | 0.991 | 0.469 | 1.63E-93 | 12 |
| LACE1 | 1.840000e-96 | 129 | 0.972625841483066 | 0.991 | 0.561 | 5.27E-92 | 12 |
| GOLGA6L2 | 9.970000e-86 | 130 | 1.03675263527345 | 0.991 | 0.379 | 2.85E-81 | 12 |
| TDRG1 | 9.210000e-123 | 131 | 1.75731941912113 | 1 | 0.173 | 2.64E-118 | 13 |
| LINC01206 | 4.890000e-88 | 132 | 1.68098721395218 | 0.968 | 0.262 | 1.40E-83 | 13 |
| KB-1592A4.15 | 4.870000e-81 | 133 | 1.72305624796057 | 0.894 | 0.214 | 1.39E-76 | 13 |
| TEX101 | 9.060000e-75 | 134 | 1.99178148877261 | 0.989 | 0.3 | 2.59E-70 | 13 |
| TPTE | 8.870000e-67 | 135 | 1.87609571339307 | 0.968 | 0.398 | 2.54E-62 | 13 |
| RCN2 | 9.420000e-61 | 136 | 1.69531802770676 | 1 | 0.575 | 2.70E-56 | 13 |
| MT-ND4 | 1.020000e-59 | 137 | 1.82376435840552 | 1 | 0.894 | 2.91E-55 | 13 |
| MT-ND3 | 2.770000e-58 | 138 | 1.94022423173953 | 1 | 0.805 | 7.94E-54 | 13 |
| MT-ATP6 | 2.390000e-57 | 139 | 1.76420824316195 | 1 | 0.858 | 6.83E-53 | 13 |
| RP11-620J15.3 | 1.490000e-55 | 140 | 1.79227256442261 | 0.989 | 0.609 | 4.27E-51 | 13 |
| CD74 | 7.770000e-295 | 141 | 3.89618179427786 | 0.901 | 0.045 | 2.23E-290 | 14 |
| SPARCL1 | 2.350000e-259 | 142 | 3.23880060789716 | 0.703 | 0.029 | 6.74E-255 | 14 |
| HLA-DRA | 4.930000e-190 | 143 | 3.57159705830869 | 0.78 | 0.056 | 1.41E-185 | 14 |
| HLA-DPA1 | 7.950000e-182 | 144 | 3.11707421034315 | 0.813 | 0.064 | 2.28E-177 | 14 |
| MGP | 3.840000e-172 | 145 | 3.50420636168568 | 0.758 | 0.058 | 1.10E-167 | 14 |
| B2M | 7.440000e-99 | 146 | 4.25956372066113 | 0.956 | 0.219 | 2.13E-94 | 14 |
| TMSB10 | 6.290000e-78 | 147 | 3.34071704105316 | 1 | 0.374 | 1.80E-73 | 14 |
| VIM | 4.140000e-74 | 148 | 3.17572722448627 | 1 | 0.404 | 1.19E-69 | 14 |
| RPL10 | 3.230000e-72 | 149 | 3.18134393373227 | 1 | 0.426 | 9.24E-68 | 14 |
| TMSB4X | 2.950000e-66 | 150 | 4.24969822240802 | 0.956 | 0.407 | 8.44E-62 | 14 |
| DCN | 0.000000e+00 | 151 | 3.01966326999118 | 0.877 | 0.022 | 0 | 15 |
| TIMP1 | 7.150000e-165 | 152 | 2.7482551634148 | 1 | 0.085 | 2.05E-160 | 15 |
| ACTA2 | 1.510000e-139 | 153 | 3.76363360324974 | 0.923 | 0.086 | 4.33E-135 | 15 |
| MYL9 | 3.380000e-134 | 154 | 3.07233280385703 | 0.923 | 0.09 | 9.66E-130 | 15 |
| TAGLN | 1.920000e-115 | 155 | 2.88069003779829 | 0.754 | 0.065 | 5.51E-111 | 15 |
| IGFBP7 | 2.460000e-108 | 156 | 4.10353905954568 | 1 | 0.144 | 7.05E-104 | 15 |
| TPM2 | 2.810000e-85 | 157 | 2.81541556381539 | 0.908 | 0.148 | 8.05E-81 | 15 |
| APOE | 4.330000e-82 | 158 | 3.69857178433412 | 0.954 | 0.182 | 1.24E-77 | 15 |
| TMSB4X | 5.600000e-52 | 159 | 2.88391494638095 | 1 | 0.409 | 1.60E-47 | 15 |
| PTGDS | 7.410000e-38 | 160 | 5.77090465753179 | 0.877 | 0.408 | 2.12E-33 | 15 |