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Table S1, related to Figure 6 D: P6 top ten DEGs Mouse sorted spermatogonia

HERMANN, Brian P., et al. The mammalian spermatogenesis single-cell transcriptome, from spermatogonial stem cells to spermatids. Cell reports, 2018, 25. Jg., Nr. 6, S. 1650-1667. e8.

Publication: https://doi.org/10.1016/j.celrep.2018.10.026

Description

P6 = postnatal day 6

Disclaimer

The publication The Mammalian Spermatogenesis Single-Cell Transcriptome, from Spermatogonial Stem Cells to Spermatids by Brian P. Hermann, Keren Cheng, Anukriti Singh, Lorena Roa-De La Cruz, Kazadi N. Mutoji, I-Chung Chen, Heidi Gildersleeve, Jake D. Lehle, Max Mayo, Birgit Westernströer, Nathan C. Law, Melissa J. Oatley, Ellen K. Velte, Bryan A. Niedenberger, Danielle Fritze, Sherman Silber, Christopher B. Geyer, Jon M. Oatley, John R. McCarrey is published under an open access no derivatives license: : https://creativecommons.org/licenses/by-nc-nd/4.0/. Granted rights: share — copy and redistribute the material in any medium or format. No alterations allowed. Thus, tables can not be shown in MFGA format.

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Pie chart of selected column

Table

GENE PVALUE Avg_logfc Pct.1 Pct.2 P_val_adj Cluster
Rasgrp2 0.000000e+00 0.621259934083547 0.855 0.465 0 1
Prdx1 0.000000e+00 0.475887223581471 1 0.989 0 1
Tcl1 0.000000e+00 0.472893963222478 0.656 0.22 0 1
Hhex 0.000000e+00 0.465665592987235 0.804 0.417 0 1
Id4 0.000000e+00 0.443890041847274 0.647 0.254 0 1
Ret 0.000000e+00 0.43136138317739 0.688 0.258 0 1
Mt1 4.450000e-274 0.510390025473309 0.999 0.822 8.95E-270 1
Rpl22l1 1.300000e-254 0.47954881409452 1 0.986 2.62E-250 1
Mt2 3.900000e-218 0.465394587046852 1 0.728 7.85E-214 1
Hist1h2ap 3.610000e-92 0.451259571931588 0.648 0.457 7.27E-88 1
Crabp1 0.000000e+00 0.982070078260092 0.98 0.509 0 2
Gfer 0.000000e+00 0.690232772874061 0.939 0.655 0 2
Dynll2 0.000000e+00 0.680126151551831 0.999 0.874 0 2
Lmo1 0.000000e+00 0.678750125005383 0.782 0.24 0 2
Ppp1r14b 0.000000e+00 0.657557073399436 0.973 0.711 0 2
Uchl1 0.000000e+00 0.622869800460567 0.991 0.758 0 2
Igfbp2 0.000000e+00 0.597823741401952 0.9 0.49 0 2
Dazl 0.000000e+00 0.596577382122246 0.999 0.731 0 2
Nt5dc2 9.570000e-287 0.601714247456534 0.854 0.501 1.92E-282 2
Stra8 1.080000e-264 0.784878100313621 0.793 0.367 2.17E-260 2
Aard 0.000000e+00 2.82353744075223 1 0.174 0 3
Rhox8 0.000000e+00 2.69830101786462 0.994 0.097 0 3
Cst12 0.000000e+00 2.559851361711 1 0.087 0 3
Clu 0.000000e+00 2.549367079795 0.999 0.095 0 3
Inha 0.000000e+00 2.4102730599638 0.996 0.085 0 3
Gstm2 0.000000e+00 2.40424524243717 0.998 0.141 0 3
Cst9 0.000000e+00 2.37111121849235 0.987 0.082 0 3
Gstm1 0.000000e+00 2.36083164912747 0.999 0.336 0 3
Kctd14 0.000000e+00 2.35957234373286 0.996 0.089 0 3
Defb19 0.000000e+00 2.26210732863438 0.997 0.094 0 3
Rps28 3.230000e-182 0.333382258570595 1 1 6.50E-178 4
Mpc2 1.430000e-174 0.404610349484615 0.997 0.908 2.87E-170 4
Usp26 2.040000e-152 0.40011861636865 0.962 0.69 4.10E-148 4
Egr4 6.690000e-150 0.358767527121075 0.926 0.538 1.34E-145 4
Bola2 4.360000e-147 0.341703988233711 0.996 0.891 8.76E-143 4
Pdcd11 5.030000e-147 0.323384126637916 0.974 0.698 1.01E-142 4
Mt1 4.730000e-130 0.428285930488125 0.983 0.839 9.51E-126 4
Sys1 1.480000e-119 0.317445638108211 0.991 0.837 2.97E-115 4
Rpl39l 4.340000e-114 0.326043872270883 0.965 0.723 8.72E-110 4
Mt2 4.660000e-97 0.381275015429608 0.968 0.754 9.36E-93 4
Egr4 0.000000e+00 0.828464668033187 0.97 0.533 0 5
Map1lc3b 0.000000e+00 0.614879582467055 1 0.947 0 5
Foxf1 0.000000e+00 0.554178612208542 0.703 0.212 0 5
Rragd 0.000000e+00 0.538385662191163 0.842 0.348 0 5
Nanos3 0.000000e+00 0.508563234748963 0.77 0.303 0 5
Sohlh1 9.190000e-281 0.560200726494681 0.968 0.596 1.85E-276 5
Sdc4 1.310000e-255 0.56520575681446 0.991 0.682 2.62E-251 5
D10Wsu102e 1.950000e-245 0.532976326673509 0.96 0.688 3.92E-241 5
Psmd7 4.710000e-242 0.504523286789369 0.983 0.817 9.47E-238 5
Pmm1 7.810000e-240 0.505452198067318 0.934 0.644 1.57E-235 5
Stra8 0.000000e+00 1.07804209541896 0.876 0.365 0 6
Crabp1 0.000000e+00 0.839314498827441 0.984 0.517 0 6
Dynll2 0.000000e+00 0.635699594631121 1 0.876 0 6
Ppp1r14b 0.000000e+00 0.612088972916865 0.987 0.714 0 6
Lmo1 0.000000e+00 0.598674400871743 0.828 0.245 0 6
Gfer 4.850000e-270 0.589030078023882 0.972 0.657 9.76E-266 6
Il11 4.350000e-168 0.563968917810942 0.855 0.469 8.74E-164 6
Loxl2 7.900000e-124 0.536210584615664 0.854 0.496 1.59E-119 6
Gm7120 2.740000e-110 0.567032757036925 0.664 0.342 5.52E-106 6
Haus8 3.290000e-92 0.541522617081698 0.831 0.516 6.61E-88 6
Nefm 0.000000e+00 0.632932241073872 0.759 0.202 0 7
Id4 0.000000e+00 0.539905651041389 0.837 0.272 0 7
Tcl1 0.000000e+00 0.518929665111186 0.819 0.245 0 7
Usp26 3.210000e-298 0.638578048856464 0.998 0.69 6.46E-294 7
Rasgrp2 3.780000e-262 0.576558439792649 0.933 0.494 7.59E-258 7
Top2a 4.550000e-224 0.523054786725886 0.984 0.654 9.15E-220 7
Mt1 4.980000e-199 0.568499325500534 0.999 0.839 1.00E-194 7
Mmd 2.290000e-193 0.498340052090373 0.999 0.775 4.61E-189 7
Mt2 1.480000e-190 0.564797520489758 0.999 0.754 2.99E-186 7
Cenpa 1.750000e-182 0.523893856087235 0.994 0.747 3.51E-178 7
Rpgrip1 5.680000e-265 1.2594853061379 0.753 0.391 1.14E-260 8
Cbx3 3.280000e-225 0.968758456711046 0.901 0.87 6.60E-221 8
Actb 2.060000e-207 1.00513916379225 0.975 0.997 4.13E-203 8
Supt16 1.090000e-185 0.914768872741606 0.772 0.59 2.20E-181 8
Hsf2 8.500000e-142 0.66429847432922 0.497 0.214 1.71E-137 8
Insig1 1.470000e-86 0.658586103537227 0.642 0.515 2.96E-82 8
Pdcd4 1.930000e-83 0.590687283101694 0.723 0.681 3.88E-79 8
mt-Nd1 6.380000e-79 0.562358351728902 1 1 1.28E-74 8
Pim1 3.710000e-73 0.672533497038315 0.703 0.623 7.46E-69 8
Sdc4 1.070000e-65 0.587522061761519 0.79 0.709 2.15E-61 8
Meg3 0.000000e+00 3.98744807322318 0.993 0.297 0 9
Dlk1 0.000000e+00 3.3684078533584 0.953 0.456 0 9
Dcn 0.000000e+00 3.09074791017798 0.978 0.044 0 9
Col3a1 0.000000e+00 2.91223574524207 0.997 0.058 0 9
Col1a2 0.000000e+00 2.66812917758181 0.995 0.064 0 9
Col1a1 0.000000e+00 2.57000837134582 0.948 0.184 0 9
Ebf1 0.000000e+00 2.49930577204177 0.946 0.059 0 9
Htra3 0.000000e+00 2.24767715911956 0.948 0.052 0 9
Tshz2 0.000000e+00 2.22812041917049 0.988 0.127 0 9
Igfbp7 0.000000e+00 2.19613437920419 0.997 0.074 0 9
Acta2 0.000000e+00 4.0906166309183 1 0.05 0 10
Myl9 0.000000e+00 3.01335703480267 1 0.166 0 10
Mgp 0.000000e+00 2.79029718409214 0.995 0.041 0 10
Tagln 0.000000e+00 2.55196404867269 0.922 0.023 0 10
Bgn 0.000000e+00 2.5083999396233 0.996 0.061 0 10
Igfbp7 0.000000e+00 2.40033490432305 1 0.076 0 10
S100a10 0.000000e+00 2.32373886108862 1 0.244 0 10
Mylk 0.000000e+00 2.29856001261655 0.961 0.22 0 10
Col4a4 0.000000e+00 2.23044997781979 0.982 0.043 0 10
Cnn2 0.000000e+00 2.21148362893828 0.989 0.18 0 10
Aard 0.000000e+00 1.7915325509565 1 0.236 0 11
Defb19 0.000000e+00 1.77948817974748 1 0.162 0 11
Cst9 0.000000e+00 1.74205268593782 0.996 0.15 0 11
Cst12 0.000000e+00 1.72000188746262 1 0.156 0 11
Clu 0.000000e+00 1.69935894620955 0.998 0.164 0 11
Gstm6 0.000000e+00 1.68094529489402 0.998 0.199 0 11
Gstm2 0.000000e+00 1.65419177168697 0.996 0.206 0 11
Kctd14 0.000000e+00 1.64464927624262 0.996 0.157 0 11
Gstm1 5.370000e-298 1.78112762905932 1 0.386 1.08E-293 11
Tuba1b 1.900000e-269 1.61363662598774 1 0.828 3.83E-265 11
Pf4 0.000000e+00 3.54918723715671 0.42 0.003 0 12
Tyrobp 0.000000e+00 3.32423204806392 0.68 0.006 0 12
C1qb 0.000000e+00 2.88907324659619 0.42 0.001 0 12
C1qc 0.000000e+00 2.8280544010074 0.42 0.001 0 12
C1qa 0.000000e+00 2.82585504476143 0.44 0.002 0 12
Lyz2 5.700000e-294 3.3418078311785 0.42 0.005 1.15E-289 12
Cd52 8.280000e-208 2.95645280756479 0.58 0.015 1.67E-203 12
Fcer1g 3.980000e-61 3.20498286390156 0.68 0.083 8.00E-57 12
Tmsb4x 2.380000e-50 3.91918809603434 1 0.306 4.79E-46 12
Apoe 1.150000e-22 4.37134689435605 0.52 0.118 2.30E-18 12